Browse Element(s) Details

Os.47251.1.S1_at

Description

gb:CR286688
DB_XREF= gi:44673254
DB_XREF=CR286688
CLONE=y846f11p3
TID=Os.47251.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47251 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_173662.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g11600	8/11	Plant protein family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g11550	NA	NA	6	+	6121038..6122369	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11560	NA	NA	6	+	6126033..6128402	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11570	Os.14919.1.S1_at	7/11	6	+	6130904..6136479	SWIM zinc finger family protein
LOC_Os06g11570	Os.56216.1.S1_at	2/11	6	+	6130904..6136479	SWIM zinc finger family protein
LOC_Os06g11570	OsAffx.29313.1.S1_at	1/11	6	+	6130904..6136479	SWIM zinc finger family protein
LOC_Os06g11580	OsAffx.27568.1.S1_at	11/11	6	+	6140611..6141770	hypothetical protein
LOC_Os06g11590	OsAffx.4800.1.S1_at	11/11	6	+	6143587..6144405	expressed protein
LOC_Os06g11590	Os.4714.2.S1_x_at	1/11	6	+	6143587..6144405	expressed protein
LOC_Os06g11590	Os.4714.2.S1_at	1/11	6	+	6143587..6144405	expressed protein
LOC_Os06g11600	OsAffx.15372.1.S1_x_at	11/11	6	+	6145722..6150197	Plant protein family protein, expressed
LOC_Os06g11600	Os.47251.1.S1_at	8/11	6	+	6145722..6150197	Plant protein family protein, expressed
LOC_Os06g11610	Os.12234.2.S1_s_at	11/11	6	+	6151031..6152439	Hsp20/alpha crystallin family protein, expressed
LOC_Os06g11620	Os.12166.1.S1_at	11/11	6	+	6154941..6158887	Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630	Os.22584.1.S1_at	10/11	6	+	6159331..6162652	F-box family protein, putative, expressed
LOC_Os06g11640	Os.49227.1.S1_at	11/11	6	+	6170590..6175330	Phosphotyrosyl phosphate activator protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47251.1.S1_at--48--1043	1	Chr06:6149716..6149740 (25 bp)	TTATCGAAGCCGCATGACATTGTTC	LOC_Os06g11600
Os.47251.1.S1_at--153--267	1	Chr06:6149722..6149746 (25 bp)	AAGCCGCATGACATTGTTCAGAGCA	LOC_Os06g11600
Os.47251.1.S1_at--1124--351	1	Chr06:6149728..6149752 (25 bp)	CATGACATTGTTCAGAGCAGGTGGA	LOC_Os06g11600
Os.47251.1.S1_at--942--827	1	Chr06:6149766..6149790 (25 bp)	GGCATAGCTGTATAGAGCCCTCTAT	LOC_Os06g11600
Os.47251.1.S1_at--508--1003	1	Chr06:6149778..6149802 (25 bp)	TAGAGCCCTCTATGTAGGCACATCT	LOC_Os06g11600
Os.47251.1.S1_at--152--167	1	Chr06:6149781..6149805 (25 bp)	AGCCCTCTATGTAGGCACATCTGTA	LOC_Os06g11600
Os.47251.1.S1_at--980--1009	1	Chr06:6149792..6149816 (25 bp)	TAGGCACATCTGTACAGGACCTCAC	LOC_Os06g11600
Os.47251.1.S1_at--1040--95	1	Chr06:6149807..6149831 (25 bp)	AGGACCTCACATTAGTTACAGCTTT	LOC_Os06g11600
Os.47251.1.S1_at--522--1005	1	NONE	TAGTTACAGCTTTACTTCGCAATAA	NONE
Os.47251.1.S1_at--516--1033	1	NONE	TTTACTTCGCAATAAGCACCACTTG	NONE
Os.47251.1.S1_at--318--35	1	NONE	ATAAGCACCACTTGAAGTCGACGGT	NONE

Target Sequence

TTATCGAAGCCGCATGACATTGTTCAGAGCAGGTGGAGGTTGAAGGACTGGGCATAGCTGTATAGAGCCCTCTATGTAGG
CACATCTGTACAGGACCTCACATTAGTTACAGCTTTACTTCGCAATAAGCACCACTTGAAGTCGACGGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis