Browse Element(s) Details


OsAffx.27568.1.S1_at

Description tigr:9634.m01131
TID=OsAffx.27568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1158011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11540NANA6+6115561..6118485retrotransposon protein, putative, unclassified
LOC_Os06g11550NANA6+6121038..6122369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11560NANA6+6126033..6128402retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11570Os.14919.1.S1_at7/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570Os.56216.1.S1_at2/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570OsAffx.29313.1.S1_at1/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11580OsAffx.27568.1.S1_at11/116+6140611..6141770hypothetical protein
LOC_Os06g11590OsAffx.4800.1.S1_at11/116+6143587..6144405expressed protein
LOC_Os06g11590Os.4714.2.S1_x_at1/116+6143587..6144405expressed protein
LOC_Os06g11590Os.4714.2.S1_at1/116+6143587..6144405expressed protein
LOC_Os06g11600OsAffx.15372.1.S1_x_at11/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11600Os.47251.1.S1_at8/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11610Os.12234.2.S1_s_at11/116+6151031..6152439Hsp20/alpha crystallin family protein, expressed
LOC_Os06g11620Os.12166.1.S1_at11/116+6154941..6158887Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630Os.22584.1.S1_at10/116+6159331..6162652F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27568.1.S1_at--1149--4971Chr06:6141709..6141733 (25 bp)
GCATGCCCGTGAACCGTACGGACAC
LOC_Os06g11580
OsAffx.27568.1.S1_at--771--2391Chr06:6141682..6141706 (25 bp)
AAACTCATCCGCCAGCCCTGGAATT
LOC_Os06g11580
OsAffx.27568.1.S1_at--1004--3131Chr06:6141661..6141685 (25 bp)
AATTCCGTCGTTCTTGCACGATAGA
LOC_Os06g11580
OsAffx.27568.1.S1_at--736--9911Chr06:6140858..6140882 (25 bp)
TACGAGTTACTTATCACTAATCAAA
LOC_Os06g11580
OsAffx.27568.1.S1_at--366--6251Chr06:6140766..6140843 (25 bp)
GATGGATCCAAGTTTGCATTGGCAT
LOC_Os06g11580
OsAffx.27568.1.S1_at--401--9071Chr06:6140752..6140776 (25 bp)
TGCATTGGCATTTGTTCGTGGCCTC
LOC_Os06g11580
OsAffx.27568.1.S1_at--631--3991Chr06:6140736..6140760 (25 bp)
CGTGGCCTCGATCTGTTTAATCTAG
LOC_Os06g11580
OsAffx.27568.1.S1_at--82--10511Chr06:6140720..6140744 (25 bp)
TTAATCTAGAGCACGCATACCTGTG
LOC_Os06g11580
OsAffx.27568.1.S1_at--989--7271Chr06:6140698..6140722 (25 bp)
GTGCCCTGGCATCAAAATATACTGT
LOC_Os06g11580
OsAffx.27568.1.S1_at--612--3871Chr06:6140677..6140701 (25 bp)
CTGTATTGGTGAGCATCTGGCGATA
LOC_Os06g11580
OsAffx.27568.1.S1_at--1096--10251Chr06:6140641..6140665 (25 bp)
TTTGATCTGGAGTTCACGCTTGCCA
LOC_Os06g11580
Target Sequence 
GCATGCCCGTGAACCGTACGGACACGGAAACTCATCCGCCAGCCCTGGAATTCCGTCGTTCTTGCACGATAGAGGTGAAA
TGTGATAGGATTCAGTATATTTACGAGTTACTTATCACTAATCAAATCGCAAGTTTATTTGATGGATCCAAGTTTGCATT
GGCATTTGTTCGTGGCCTCGATCTGTTTAATCTAGAGCACGCATACCTGTGCCCTGGCATCAAAATATACTGTATTGGTG
AGCATCTGGCGATAGAGATGTATATTTTGATCTGGAGTTCACGCTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis