Browse Element(s) Details


Os.49227.1.S1_at

Description gb:AK072030.1
DB_XREF= gi:32982053
TID=Os.49227.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106H10, full insert sequence.
FL= gb:AK072030.1 gb:AK100405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1164011/11Phosphotyrosyl phosphate activator protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11600OsAffx.15372.1.S1_x_at11/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11600Os.47251.1.S1_at8/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11610Os.12234.2.S1_s_at11/116+6151031..6152439Hsp20/alpha crystallin family protein, expressed
LOC_Os06g11620Os.12166.1.S1_at11/116+6154941..6158887Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630Os.22584.1.S1_at10/116+6159331..6162652F-box family protein, putative, expressed
LOC_Os06g11640Os.49227.1.S1_at11/116+6170590..6175330Phosphotyrosyl phosphate activator protein, expressed
LOC_Os06g11650Os.50807.1.S1_at9/116+6176897..6178164Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11660Os.37006.1.S1_at6/116+6179336..6180477Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11670OsAffx.4801.1.S1_at11/116+6188102..6188359hypothetical protein
LOC_Os06g11680OsAffx.27569.1.S1_at11/116+6190532..6191497Phosphate-induced protein 1 conserved region containing protein
LOC_Os06g11690OsAffx.27570.1.S1_at11/116+6196207..6196577hypothetical protein
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019211molecular_functionphosphatase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49227.1.S1_at--1090--2471Chr06:6174142..6174166 (25 bp)
AACAGCGGGCTGCTCAAGATGTACA
LOC_Os06g11640
Os.49227.1.S1_at--144--211Chr06:6174081..6174105 (25 bp)
ATTTCCTCTTTGGTTCACTCATCAA
LOC_Os06g11640
Os.49227.1.S1_at--1136--3291Chr06:6170988..6171012 (25 bp)
CACACACCATCATGTTCTGCAAGTA
LOC_Os06g11640
Os.49227.1.S1_at--426--2831Chr06:6170968..6170992 (25 bp)
AAGTACTCCGCCTGGATGCAAAAGA
LOC_Os06g11640
Os.49227.1.S1_at--1084--6331Chr06:6170931..6170955 (25 bp)
GATGCTGCTCAATGTCTGTACCTAT
LOC_Os06g11640
Os.49227.1.S1_at--218--7311Chr06:6170860..6170884 (25 bp)
GTGCTCGGTTTCTGCATGATGGATA
LOC_Os06g11640
Os.49227.1.S1_at--56--4651Chr06:6170830..6170854 (25 bp)
GCGTTTCATCATTCGTTGTGCTGTA
LOC_Os06g11640
Os.49227.1.S1_at--45--6971Chr06:6170808..6170832 (25 bp)
GTAGCGTAGTAGTTCCTCATCACAC
LOC_Os06g11640
Os.49227.1.S1_at--567--2171Chr06:6170787..6170811 (25 bp)
ACACCCGCTGTGGAGCTTAAATTCT
LOC_Os06g11640
Os.49227.1.S1_at--18--2251Chr06:6170769..6170793 (25 bp)
AAATTCTGGACCTTGTCTGTTCCTG
LOC_Os06g11640
Os.49227.1.S1_at--828--9811Chr06:6170686..6170710 (25 bp)
TAACTCCATGTACTCAGGCTTTTTG
LOC_Os06g11640
Target Sequence 
AACAGCGGGCTGCTCAAGATGTACAAGGCTGAGGTGCTTGAGAAAGTGCCGATTATGCAGCATTTCCTCTTTGGTTCACT
CATCAAATGGGAGGACTGAAGCAATATCCAAAACCCCTCTGCTTCGAGGCAAATGTCCAGAACACACACACACACCATCA
TGTTCTGCAAGTACTCCGCCTGGATGCAAAAGACTGATGTACAGCGATGCTGCTCAATGTCTGTACCTATAGAAGCTCAC
TTTCCTTCTAGCGTTATGGGCTCCGGCTTAGGGGATGTGCTCGGTTTCTGCATGATGGATAGCATAGCGTTTCATCATTC
GTTGTGCTGTAGCGTAGTAGTTCCTCATCACACCCGCTGTGGAGCTTAAATTCTGGACCTTGTCTGTTCCTGTTCAGCTC
ACATTGCTTTGGGGATTCCCCTCTGGACAGGCTGGTAGTGGTAATATTAATAACTCCATGTACTCAGGCTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis