Browse Element(s) Details


Os.37006.1.S1_at

Description gb:AK061401.1
DB_XREF= gi:32971419
TID=Os.37006.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G10, full insert sequence.
FL= gb:AK061401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g116606/11Phosphate-induced protein 1 conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11620Os.12166.1.S1_at11/116+6154941..6158887Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630Os.22584.1.S1_at10/116+6159331..6162652F-box family protein, putative, expressed
LOC_Os06g11640Os.49227.1.S1_at11/116+6170590..6175330Phosphotyrosyl phosphate activator protein, expressed
LOC_Os06g11650Os.50807.1.S1_at9/116+6176897..6178164Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11660Os.37006.1.S1_at6/116+6179336..6180477Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11670OsAffx.4801.1.S1_at11/116+6188102..6188359hypothetical protein
LOC_Os06g11680OsAffx.27569.1.S1_at11/116+6190532..6191497Phosphate-induced protein 1 conserved region containing protein
LOC_Os06g11690OsAffx.27570.1.S1_at11/116+6196207..6196577hypothetical protein
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11710OsAffx.27571.1.S1_at11/116+6201141..6201791Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g11720Os.51664.1.S1_at11/116+6204614..6206558UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37006.1.S1_at--80--8011Chr06:6179693..6179717 (25 bp)
GGATGGTGATCAACGTGGCCAGCAT
LOC_Os06g11660
Os.37006.1.S1_at--906--371Chr06:6179685..6179709 (25 bp)
ATCAACGTGGCCAGCATGGTGGCCG
LOC_Os06g11660
Os.37006.1.S1_at--985--4111Chr06:6179501..6179525 (25 bp)
CGCACGGCGCGCACGGCCGGAAATA
LOC_Os06g11660
Os.37006.1.S1_at--832--8691Chr06:6179419..6179443 (25 bp)
TGTCCACCACGCGTCGGGTTGTGTA
LOC_Os06g11660
Os.37006.1.S1_at--538--1831Chr06:6179411..6179435 (25 bp)
ACGCGTCGGGTTGTGTATTGTGTAC
LOC_Os06g11660
Os.37006.1.S1_at--538--8671Chr06:6179350..6179374 (25 bp)
TGTGAGTACGTGACCATGTTGTGTA
LOC_Os06g11660
Os.37006.1.S1_at--1043--8811Chr06:6179334..6179358 (25 bp)
TGTTGTGTACATAAGTTCGTGTCAA
NONE
Os.37006.1.S1_at--962--9171Chr06:6179271..6179295 (25 bp)
TGCCTGCTTGCTGGGTAGCAACAAC
NONE
Os.37006.1.S1_at--828--10711Chr06:6179264..6179288 (25 bp)
TTGCTGGGTAGCAACAACTATAGCA
NONE
Os.37006.1.S1_at--630--211NONE
ATTTGTAGGTGGAAGCGCACATGCT
NONE
Os.37006.1.S1_at--365--7531Chr06:6179194..6179218 (25 bp)
GTGGAAGCGCACATGCTGCACCGTA
NONE
Target Sequence 
GGATGGTGATCAACGTGGCCAGCATGGTGGCCGGCGCGGTGACCAACCCGTTCGGCGACGGGTTCTACCANGGGGAGCGC
GGCGCGGCGCTGGAGGCCGCGACGGCGTGCACGGGCGTGTACGGCAAGGGCGCGTACCCGGGCTACGCCGGNGCGCTGCT
GGTGGACAAGGCNACCGGCGCCAGCTACAACGCGCACGGCGCGCACGGCCGGAAATACCTCCTCCCGGCNNTCTTCGACC
CNCGACACGTCCGCCTGCTCCACGCTCGTGTAACCTGTCCACCACGCGTCGGGTTGTGTATTGTGTACATGCTGATAGTA
GTATGTCTNTATGTATGTANGTGATGTGAGTACGTGACCATGTTGTGTACATAAGTTCGTGTCAAANNNNANNNNNNANN
TTTGGCTCTTCCTGCTGCCTGCCTGCCTGCTTGCTGGGTAGCAACAACTATAGCANAGTNAGCGACGCTTTATAAATAAN
AAGNACTTTTGNATTTGTAGGTGGAAGCGCACATGCTGCACCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis