Browse Element(s) Details


OsAffx.15374.1.S1_s_at

Description tigr:9634.m01144
TID=OsAffx.15374.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phi-1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1170011/11Phosphate-induced protein 1 conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11640Os.49227.1.S1_at11/116+6170590..6175330Phosphotyrosyl phosphate activator protein, expressed
LOC_Os06g11650Os.50807.1.S1_at9/116+6176897..6178164Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11660Os.37006.1.S1_at6/116+6179336..6180477Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11670OsAffx.4801.1.S1_at11/116+6188102..6188359hypothetical protein
LOC_Os06g11680OsAffx.27569.1.S1_at11/116+6190532..6191497Phosphate-induced protein 1 conserved region containing protein
LOC_Os06g11690OsAffx.27570.1.S1_at11/116+6196207..6196577hypothetical protein
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11710OsAffx.27571.1.S1_at11/116+6201141..6201791Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g11720Os.51664.1.S1_at11/116+6204614..6206558UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11730Os.12968.1.S1_at11/116+6207297..6213435RNA recognition motif family protein, expressed
LOC_Os06g11740Os.23073.1.S1_at11/116+6221593..6223682adenosine 5'-phosphosulfate reductase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15374.1.S1_s_at--1008--5771Chr06:6199367..6199391 (25 bp)
GACGACCGGTGGCAGCTACAACGCC
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--574--5431Chr06:6199442..6199466 (25 bp)
GACATCCCGTTGCACCACGTTGGTG
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--366--7471Chr06:6199486..6199510 (25 bp)
GTGTGTGTGCGCTTCAAATTAAGGT
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--395--6831Chr06:6199544..6199568 (25 bp)
GTTTCTTTCACACTAGCTGGCTGGT
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--292--2031Chr06:6199555..6199579 (25 bp)
ACTAGCTGGCTGGTTTGTGGGCACA
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--474--10331Chr06:6199583..6199607 (25 bp)
TTTATGCGGTGTGGTTGTAAAATCC
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--858--10731Chr06:6199610..6199634 (25 bp)
TTGATTTGGTTCTGGTGTACACCGA
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--300--7751Chr06:6199623..6199647 (25 bp)
GGTGTACACCGAGTTTTTAAGCATG
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--343--3751Chr06:6199657..6199681 (25 bp)
CTCACCTGTGTGAGTAGGTATGCAT
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--984--3571Chr06:6199679..6199703 (25 bp)
CATTTGATGAGTGCGCATGTCCAAA
LOC_Os06g11700
OsAffx.15374.1.S1_s_at--892--691Chr06:6199685..6199709 (25 bp)
ATGAGTGCGCATGTCCAAATGTACT
LOC_Os06g11700
Target Sequence 
GACGACCGGTGGCAGCTACAACGCCGTCGGCGCCCATGGCCGGAAGTACCTTCTCCCCGCCGTGTACGATCCGGCGACAT
CCCGTTGCACCACGTTGGTGTAGAGCGCACGTCGAGGAAGTGTGTGTGCGCTTCAAATTAAGGTGTAAATAACCATGAAA
GTTACAGTAACAACGTTGTTTCTTTCACACTAGCTGGCTGGTTTGTGGGCACATGGTTTATGCGGTGTGGTTGTAAAATC
CACTTGATTTGGTTCTGGTGTACACCGAGTTTTTAAGCATGTGGAGAGAACTCACCTGTGTGAGTAGGTATGCATTTGAT
GAGTGCGCATGTCCAAATGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15374.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis