Browse Element(s) Details


Os.15957.1.S1_at

Description gb:AK072559.1
DB_XREF= gi:32982582
TID=Os.15957.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132A10, full insert sequence.
FL= gb:AK072559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1180011/11Annexin-like protein RJ4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11750OsAffx.15375.1.S1_at9/116+6226814..6228558hypothetical protein
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein
LOC_Os06g11780OsAffx.28215.1.S1_at10/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11780Os.57514.1.S1_x_at1/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11790Os.18671.1.S1_at11/116+6242662..6246718TLD family protein, expressed
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed
LOC_Os06g11840OsAffx.4803.1.S1_at10/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.1206.1.S1_x_at2/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_x_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15957.1.S1_at--76--2951Chr06:6251244..6251268 (25 bp)
AAGGCTCAGTTGATTGCGACATTCA
LOC_Os06g11800
Os.15957.1.S1_at--435--10111Chr06:6251286..6251307 (22 bp)
TATGGTCACCCAATCAACAAGGATC
LOC_Os06g11800
Os.15957.1.S1_at--719--451Chr06:6252192..6252216 (25 bp)
ATCTCAAGGCTGATCCCAAGGACGA
LOC_Os06g11800
Os.15957.1.S1_at--647--8791Chr06:6252254..6252278 (25 bp)
TGTTGCCCTGACAGGTACTTCGAGA
LOC_Os06g11800
Os.15957.1.S1_at--285--2331Chr06:6252278..6252302 (25 bp)
AAAGTCATCAGGTTGGCCATCGCAG
LOC_Os06g11800
Os.15957.1.S1_at--846--471Chr06:6252360..6252384 (25 bp)
ATCTGAAGCTGATCACGGAGGCGTA
LOC_Os06g11800
Os.15957.1.S1_at--97--3731Chr06:6252442..6252466 (25 bp)
CTACGAGAGGATGCTTCTTGCTCTT
LOC_Os06g11800
Os.15957.1.S1_at--256--8071Chr06:6252475..6252499 (25 bp)
GGAGCAGTGAGCCATGCCTATCTTG
LOC_Os06g11800
Os.15957.1.S1_at--253--7011Chr06:6252600..6252624 (25 bp)
GTACTGTTTGCTGCAGCTTGCATAA
LOC_Os06g11800
Os.15957.1.S1_at--811--5231Chr06:6252651..6252675 (25 bp)
GAATGCGTTGGCTCATGGGACCTCA
LOC_Os06g11800
Os.15957.1.S1_at--193--8651Chr06:6252666..6252690 (25 bp)
TGGGACCTCACTTATTTTGCAACTT
LOC_Os06g11800
Target Sequence 
AAGGCTCAGTTGATTGCGACATTCAATCGTTACAATGATGAATATGGTCACCCAATCAACAAGGATCTCAAGGCTGATCC
CAAGGACGAGTTCCTTTCCACNGCTGCGTGNCAATCATCCGCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCAT
CAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGA
AGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTAC
GAGAGGATGCTTCTTGCTCTTCTGGGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCAT
GTCATATCAGAGAATAAACCTGTTATGCAGGGGANACANCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTG
TTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCACTTATTTTGC
AACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis