Browse Element(s) Details


OsAffx.9230.2.S1_at

Description tigr:9638.m02098
TID=OsAffx.9230.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g118401/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed
LOC_Os06g11840OsAffx.4803.1.S1_at10/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.1206.1.S1_x_at2/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_x_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11850OsAffx.27573.1.S1_at11/116+6294653..6298081hypothetical protein
LOC_Os06g11860OsAffx.10845.1.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed
LOC_Os06g11860OsAffx.10845.2.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9230.2.S1_at--924--8033Chr07:21807462..21807486 (25 bp)
GGAGATGGTAACCTAGACCTAGCAA
NONE
OsAffx.9230.2.S1_at--474--2531Chr10:12503560..12503584 (25 bp)
AACCTAGACCTAGCAACCAGGGATT
NONE
OsAffx.9230.2.S1_at--569--1491Chr10:12503549..12503573 (25 bp)
AGCAACCAGGGATTCGCAGCAGCGT
NONE
OsAffx.9230.2.S1_at--423--1513Chr07:21807499..21807523 (25 bp)
AGCAGCGTGGTGTGGCGTGCGGGCG
NONE
OsAffx.9230.2.S1_at--253--8232Chr07:21807523..21807547 (25 bp)
GGCAATGGCCGGTTTGCAGGTCGGG
NONE
OsAffx.9230.2.S1_at--637--812Chr07:21807549..21807573 (25 bp)
ATGGTGTGGCGTGCGGCTATTGCGG
NONE
OsAffx.9230.2.S1_at--781--3634Chr07:21807618..21807642 (25 bp)
CTTCAGATGACGGCGATCGTGACCG
NONE
OsAffx.9230.2.S1_at--244--3991NONE
CGGGCGTGGCTGGTATTCATTGAAT
NONE
OsAffx.9230.2.S1_at--119--3512Chr10:14865430..14865454 (25 bp)
CATGAATTGAAGTGGGCCCGCCCCT
NONE
OsAffx.9230.2.S1_at--871--4311Chr10:12502686..12502710 (25 bp)
CCTTCGGCAGCATGCTGCAGGCCGG
NONE
OsAffx.9230.2.S1_at--732--4071Chr10:12502640..12502664 (25 bp)
CGACGAGAACACGCTTACGTTCGAC
NONE
Target Sequence 
GGAGATGGTAACCTAGACCTAGCAACCAGGGATTCGCAGCAGCGTGGTGTGGCGTGCGGGCGGCAATGGCCGGTTTGCAG
GTCGGGGATGGTGTGGCGTGCGGCTATTGCGGCAGCGGCGGCTGACAGAAGTGGTGGGACAGGAGGGGATACATACCTTC
AGATGACGGCGATCGTGACCGGCGGAGGGCGGCGCGGGACGCGGGACTCGGGGCGCGGCGACGGCAGCGAGGAGACGGCG
CGGGTCGCAGCGTCGGCGGTCGAGGGCGGCGCGGGACGCGGGACGCGGGGCGCGGGGCACGGGGCTGCTGAGGAGGCGAT
GCGGCGGCGAGGCGAGGAGGCGACGCAGGGAGGAGGGCGAAGGTGGATGATCGATCCGATGCGAGGTGGAGGCGCGTTGG
AGAGGGCGGCGGCGATCGCGGAGGAGGCCGGCGGGCGTGGCTGGTATTCATTGAATACCCATGAATTGAAGTGGGCCCGC
CCCTTCGGCAGCATGCTGCAGGCCGGCAGGAAGATGGCGTACGACCTCGACGAGAACACGCTTACGTTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9230.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis