Browse Element(s) Details


OsAffx.10845.2.S1_s_at

Description tigr:9634.m01160
TID=OsAffx.10845.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DRE binding factor 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1186011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11840OsAffx.4803.1.S1_at10/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.1206.1.S1_x_at2/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_x_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11850OsAffx.27573.1.S1_at11/116+6294653..6298081hypothetical protein
LOC_Os06g11860OsAffx.10845.1.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed
LOC_Os06g11860OsAffx.10845.2.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed
LOC_Os06g11870NANA6+6308926..6309282hypothetical protein
LOC_Os06g11880NANA6+6315295..6318626transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.47463.1.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.14491.2.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10845.2.S1_s_at--283--8091Chr06:6304150..6304174 (25 bp)
GGACTCGCCCAAAGGCTCCGCGTCG
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--369--4351Chr06:6304118..6304142 (25 bp)
CCACGACGTCGGAGGGAGACGAGTC
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--520--1391Chr06:6304102..6304126 (25 bp)
AGACGAGTCGGCGATCTCCGCCTGT
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--1122--4571Chr06:6304038..6304062 (25 bp)
GCGCTCCCCGAGATGGCAAACCTTG
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--372--9291Chr06:6304034..6304058 (25 bp)
TCCCCGAGATGGCAAACCTTGACTT
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--219--6031Chr06:6304029..6304053 (25 bp)
GAGATGGCAAACCTTGACTTCACGG
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--565--6231Chr06:6304027..6304051 (25 bp)
GATGGCAAACCTTGACTTCACGGAG
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--520--8231Chr06:6304024..6304048 (25 bp)
GGCAAACCTTGACTTCACGGAGGCG
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--1120--4151Chr06:6304001..6304025 (25 bp)
CGCCATGGGACGAATCCGACGCCTT
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--862--3451Chr06:6303998..6304022 (25 bp)
CATGGGACGAATCCGACGCCTTCCA
LOC_Os06g11860
OsAffx.10845.2.S1_s_at--477--10671Chr06:6303978..6304002 (25 bp)
TTCCACCTCTACAAGTGTCCGTCAT
LOC_Os06g11860
Target Sequence 
GGACTCGCCCAAAGGCTCCGCGTCGACGACGACCACGACGTCGGAGGGAGACGAGTCGGCGATCTCCGCCTGTTCGCCTC
CTCTCCCGCCGCCGCCACCGCCGCCGCCGGCGGCGCTCCCCGAGATGGCAAACCTTGACTTCACGGAGGCGCCATGGGAC
GAATCCGACGCCTTCCACCTCTACAAGTGTCCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10845.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis