Browse Element(s) Details


OsAffx.27573.1.S1_at

Description tigr:9634.m01159
TID=OsAffx.27573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1185011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11840OsAffx.4803.1.S1_at10/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.1206.1.S1_x_at2/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_x_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11850OsAffx.27573.1.S1_at11/116+6294653..6298081hypothetical protein
LOC_Os06g11860OsAffx.10845.1.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed
LOC_Os06g11860OsAffx.10845.2.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed
LOC_Os06g11870NANA6+6308926..6309282hypothetical protein
LOC_Os06g11880NANA6+6315295..6318626transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.47463.1.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.14491.2.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27573.1.S1_at--621--1331Chr06:6297978..6298002 (25 bp)
AGAGGGAGCTCGACGCTAACACCGG
LOC_Os06g11850
OsAffx.27573.1.S1_at--657--5791Chr06:6297898..6297922 (25 bp)
GACGACAACGCGATCGGGCACCACG
LOC_Os06g11850
OsAffx.27573.1.S1_at--208--1311Chr06:6297232..6297256 (25 bp)
AGATGTTAGAGCTGGGCCTCGTTTA
LOC_Os06g11850
OsAffx.27573.1.S1_at--697--8651Chr06:6297220..6297244 (25 bp)
TGGGCCTCGTTTACCGTTGTATACT
LOC_Os06g11850
OsAffx.27573.1.S1_at--279--10311Chr06:6297211..6297235 (25 bp)
TTTACCGTTGTATACTGGCCCGAGG
LOC_Os06g11850
OsAffx.27573.1.S1_at--996--9891Chr06:6296732..6297223 (25 bp)
TACTGGCCCGAGGTTAATTAACCAT
LOC_Os06g11850
OsAffx.27573.1.S1_at--839--2631Chr06:6296714..6296737 (24 bp)
AACCATCTATATCATGTGGAGGTCA
LOC_Os06g11850
OsAffx.27573.1.S1_at--365--2911Chr06:6295024..6295259 (25 bp)
AAGGTTGAATCTGCCTACCCATACT
LOC_Os06g11850
OsAffx.27573.1.S1_at--573--3811Chr06:6295014..6295038 (25 bp)
CTGCCTACCCATACTTAGGTCTAAG
LOC_Os06g11850
OsAffx.27573.1.S1_at--404--2071Chr06:6294989..6295013 (25 bp)
ACTTGACATGTGGTGCTCGTATTTA
LOC_Os06g11850
OsAffx.27573.1.S1_at--1099--4011Chr06:6294972..6294996 (25 bp)
CGTATTTAAAGCTCAGTTTCTCAGA
LOC_Os06g11850
Target Sequence 
AGAGGGAGCTCGACGCTAACACCGGGGTAGAGAGGGAGGAGGCGAGAAGGCCGGTGACCACGCCGGATGTTGATGGTGGT
GACGACAACGCGATCGGGCACCACGGAAGGGGGGCGGTGGGGATGGCTGACCATGAAATAATGGGGTTAGATGTTAGAGC
TGGGCCTCGTTTACCGTTGTATACTGGCCCGAGGTTAATTAACCATCTATATCATGTGGAGGTCAAATTTACTCAAAAAA
GAGTAAAAGGGAGGGAAGAAGGAGGTGAGGGGAAGGTTGAATCTGCCTACCCATACTTAGGTCTAAGACTTGACATGTGG
TGCTCGTATTTAAAGCTCAGTTTCTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis