Browse Element(s) Details


Os.11475.3.S1_x_at

Description gb:NM_197811.1
DB_XREF= gi:37536981
TID=Os.11475.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0057L21.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4185011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11475.3.S1_x_at--624--4811Chr10:22191107..22191131 (25 bp)
GCTCTCCTTCTTCAGATCAGATCAT
LOC_Os10g41850
Os.11475.3.S1_x_at--122--4951Chr10:22191035..22191059 (25 bp)
GCATTTCTCCCGGATGTCAGGAACT
LOC_Os10g41850
Os.11475.3.S1_x_at--1088--7111Chr10:22191020..22191044 (25 bp)
GTCAGGAACTATTCACCTTGTGGAC
LOC_Os10g41850
Os.11475.3.S1_x_at--175--6991Chr10:22190971..22190995 (25 bp)
GTACCGTAAGATCCGCCAGAGCAAT
LOC_Os10g41850
Os.11475.3.S1_x_at--573--10331Chr10:22190894..22190918 (25 bp)
TTTACAGGGTGGATTTCGACGCCGG
LOC_Os10g41850
Os.11475.3.S1_x_at--217--10771Chr10:22190798..22190889 (25 bp)
TTGATCCCGAGGCTCGCAGCTGACA
LOC_Os10g41850
Os.11475.3.S1_x_at--48--8971Chr10:22190778..22190802 (25 bp)
TGACACTCTCTACCTGGGATTCGAT
LOC_Os10g41850
Os.11475.3.S1_x_at--970--9531Chr10:22190770..22190794 (25 bp)
TCTACCTGGGATTCGATTGTCGTGA
LOC_Os10g41850
Os.11475.3.S1_x_at--722--431Chr10:22190672..22190696 (25 bp)
ATCTTCCGTGAGATGTCGCAGCAGG
LOC_Os10g41850
Os.11475.3.S1_x_at--958--3671Chr10:22190595..22190619 (25 bp)
CTTTCTTCAGATGTTGCAGCAGCCA
LOC_Os10g41850
Os.11475.3.S1_x_at--1159--1491Chr10:22190578..22190602 (25 bp)
AGCAGCCATACAGCTTCGTCAACTG
LOC_Os10g41850
Target Sequence 
GCTCTCCTTCTTCAGATCAGATCATAGAGGGCGGCCGCGGCTGGTCACCACCGCTCAGCCGAGCAAGCCCTTGCATTTCT
CCCGGATGTCAGGAACTATTCACCTTGTGGACAATGGTGGGGAGTTTGATGCTGGTGTACCGTAAGATCCGCCAGAGCAA
TGTTGATGATGAATCGCGGCAAGGTGCTGCGAAATACGAGATGAAGTATGATGTTTACAGGGTGGATTTCGACGCCGGGG
ACTTGATCCCGAGGCTCGCAGCTGACACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGATGAACGAAATCGAC
GGTTACAATGTTGCAGATGGGAGTAGCGAGCCATGCCACCTCGACTCCATCTTCCGTGAGATGTCGCAGCAGGACGGTTA
CAGTGTTGCAGATGGAAGCAGCGAGCCATGCCACCTCGACTGCATCTTTCTTCAGATGTTGCAGCAGCCATACAGCTTCG
TCAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11475.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis