Browse Element(s) Details


Os.53785.1.S1_at

Description gb:AK100013.1
DB_XREF= gi:32985222
TID=Os.53785.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013142C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013142C13, full insert sequence.
FL= gb:AK100013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4187011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53785.1.S1_at--110--10471Chr10:22201856..22201880 (25 bp)
TTACCTGCATGAACCAGCTGAACTG
LOC_Os10g41870
Os.53785.1.S1_at--554--5471Chr10:22201837..22201861 (25 bp)
GAACTGCTTGCCACTAGTGTATTGA
LOC_Os10g41870
Os.53785.1.S1_at--354--8851Chr10:22201815..22201839 (25 bp)
TGATCTTCGTTCTGCTTGTCGGTGA
LOC_Os10g41870
Os.53785.1.S1_at--933--10811Chr10:22201800..22201824 (25 bp)
TTGTCGGTGATGATGCCTGAACCCT
LOC_Os10g41870
Os.53785.1.S1_at--802--2611Chr10:22201781..22201805 (25 bp)
AACCCTGTTGTTTGTGCTTGGTCCA
LOC_Os10g41870
Os.53785.1.S1_at--177--7191Chr10:22201717..22201741 (25 bp)
GTGGATTGTCGGAAGTTCTTCCCCG
LOC_Os10g41870
Os.53785.1.S1_at--109--1611Chr10:22201662..22201686 (25 bp)
AGCTGCTGCTGGACAACCAGATGCA
LOC_Os10g41870
Os.53785.1.S1_at--129--8211Chr10:22201626..22201650 (25 bp)
GGAAGGCTTCCATCGAGAGCATGCT
LOC_Os10g41870
Os.53785.1.S1_at--352--1371Chr10:22201611..22201635 (25 bp)
AGAGCATGCTGTCCGGTCGAAAGCT
LOC_Os10g41870
Os.53785.1.S1_at--1122--2231Chr10:22201550..22201574 (25 bp)
AAATTGCCTTGCTTTTCTTACCATG
LOC_Os10g41870
Os.53785.1.S1_at--227--3571Chr10:22201522..22201546 (25 bp)
CATCACCCCTGTACATGCAATGTAT
LOC_Os10g41870
Target Sequence 
TTACCTGCATGAACCAGCTGAACTGCTTGCCACTAGTGTATTGATCTTCGTTCTGCTTGTCGGTGATGATGCCTGAACCC
TGTTGTTTGTGCTTGGTCCAGATGAGGTGTTGGCAGTCTCTGGCGGTGGCGAGGCGGTGGTGGATTGTCGGAAGTTCTTC
CCCGTGGCGCTGAGCACGGCAGCAGGGACGGTGCAGCTGCTGCTGGACAACCAGATGCACTGCAAGGTCTGGAAGGCTTC
CATCGAGAGCATGCTGTCCGGTCGAAAGCTCAAGCACACCAAATGCTGATTAATTAGAGCCAGGAAAAATTGCCTTGCTT
TTCTTACCATGTTGCATCACCCCTGTACATGCAATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis