Browse Element(s) Details


Os.11475.1.S1_a_at

Description gb:AK111422.1
DB_XREF= gi:32996631
TID=Os.11475.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G10, full insert sequence.
FL= gb:AK111422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4186011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11475.1.S1_a_at--259--5091Chr10:22193540..22193564 (25 bp)
GCACGGGGCATTCTCAACCTACAAA
LOC_Os10g41860
Os.11475.1.S1_a_at--990--3131Chr10:22192878..22192898 (21 bp)
AATTATGAGGTGCTTGACGTCTCCA
LOC_Os10g41860
Os.11475.1.S1_a_at--192--10131Chr10:22192875..22192898 (24 bp)
TATGAGGTGCTTGACGTCTCCAGCA
LOC_Os10g41860
Os.11475.1.S1_a_at--39--5011Chr10:22192826..22192850 (25 bp)
GCATGGTGTTGTTCCCGCTGGTGCT
LOC_Os10g41860
Os.11475.1.S1_a_at--548--7411Chr10:22192821..22192845 (25 bp)
GTGTTGTTCCCGCTGGTGCTCAGAA
LOC_Os10g41860
Os.11475.1.S1_a_at--478--8791Chr10:22192817..22192841 (25 bp)
TGTTCCCGCTGGTGCTCAGAACGGC
LOC_Os10g41860
Os.11475.1.S1_a_at--803--9631Chr10:22192802..22192826 (25 bp)
TCAGAACGGCCGCTGGTGTGGTACA
LOC_Os10g41860
Os.11475.1.S1_a_at--408--7831Chr10:22192783..22192807 (25 bp)
GGTACAGCTGCTGTTGGACAGTCAG
LOC_Os10g41860
Os.11475.1.S1_a_at--958--6611Chr10:22192771..22192795 (25 bp)
GTTGGACAGTCAGATGCACTGCAAG
LOC_Os10g41860
Os.11475.1.S1_a_at--380--5271Chr10:22192738..22192762 (25 bp)
GAATGCCATCGAGGGCATTCTGTCC
LOC_Os10g41860
Os.11475.1.S1_a_at--1053--9371Chr10:22192730..22192754 (25 bp)
TCGAGGGCATTCTGTCCGACCAAAA
LOC_Os10g41860
Target Sequence 
GCACGGGGCATTCTCAACCTACAAAAATTATGAGGTGCTTGACGTCTCCAGCAACGGCGGCGATGTGGTGGTGGACGGCA
TGGTGTTGTTCCCGCTGGTGCTCAGAACGGCCGCTGGTGTGGTACAGCTGCTGTTGGACAGTCAGATGCACTGCAAGGTN
TGGAAGAATGCCATCGAGGGCATTCTGTCCGACCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11475.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis