Browse Element(s) Details

Os.11475.3.S1_at

Description

gb:NM_197811.1
DB_XREF= gi:37536981
TID=Os.11475.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0057L21.6), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g41850	11/11	F-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g41800	Os.54414.1.S1_at	11/11	10	+	22168202..22169570	expressed protein
LOC_Os10g41800	Os.5586.1.S1_at	1/11	10	+	22168202..22169570	expressed protein
LOC_Os10g41810	NA	NA	10	+	22172933..22173166	hypothetical protein
LOC_Os10g41820	Os.6799.1.S1_at	11/11	10	+	22173744..22180442	Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829	OsAffx.20127.1.A1_at	11/11	10	+	22181333..22183609	F-box domain containing protein
LOC_Os10g41829	Os.29966.1.S1_at	1/11	10	+	22181333..22183609	F-box domain containing protein
LOC_Os10g41829	Os.29966.1.S1_x_at	1/11	10	+	22181333..22183609	F-box domain containing protein
LOC_Os10g41838	Os.20614.1.S1_at	11/11	10	+	22186368..22188274	F-box protein interaction domain containing protein, expressed
LOC_Os10g41838	Os.20614.3.S1_x_at	11/11	10	+	22186368..22188274	F-box protein interaction domain containing protein, expressed
LOC_Os10g41838	Os.20614.4.S1_x_at	11/11	10	+	22186368..22188274	F-box protein interaction domain containing protein, expressed
LOC_Os10g41850	Os.11475.2.S1_at	11/11	10	+	22190385..22191886	F-box domain containing protein, expressed
LOC_Os10g41850	Os.11475.3.S1_x_at	11/11	10	+	22190385..22191886	F-box domain containing protein, expressed
LOC_Os10g41850	Os.11475.3.S1_at	11/11	10	+	22190385..22191886	F-box domain containing protein, expressed
LOC_Os10g41850	Os.27237.3.A1_x_at	1/11	10	+	22190385..22191886	F-box domain containing protein, expressed
LOC_Os10g41860	Os.11475.1.S1_a_at	11/11	10	+	22192336..22195173	expressed protein
LOC_Os10g41860	Os.11475.1.S1_at	11/11	10	+	22192336..22195173	expressed protein
LOC_Os10g41870	Os.53785.1.S1_at	11/11	10	+	22201456..22204690	expressed protein
LOC_Os10g41880	OsAffx.14308.1.S1_at	11/11	10	+	22211550..22212242	hypothetical protein
LOC_Os10g41880	OsAffx.14308.1.S1_x_at	11/11	10	+	22211550..22212242	hypothetical protein
LOC_Os10g41900	OsAffx.7905.1.S1_at	11/11	10	+	22215169..22219060	NB-ARC domain containing protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11475.3.S1_at--196--813	1	Chr10:22190802..22190893 (25 bp)	GGACTTGATCCCGAGGCTCGCAGCT	LOC_Os10g41850
Os.11475.3.S1_at--216--1077	1	Chr10:22190798..22190889 (25 bp)	TTGATCCCGAGGCTCGCAGCTGACA	LOC_Os10g41850
Os.11475.3.S1_at--60--407	1	Chr10:22190791..22190814 (24 bp)	CGAGGCTCGCAGCTGACACTCTCTA	LOC_Os10g41850
Os.11475.3.S1_at--803--503	1	Chr10:22190783..22190807 (25 bp)	GCAGCTGACACTCTCTACCTGGGAT	LOC_Os10g41850
Os.11475.3.S1_at--49--897	1	Chr10:22190778..22190802 (25 bp)	TGACACTCTCTACCTGGGATTCGAT	LOC_Os10g41850
Os.11475.3.S1_at--1069--217	1	Chr10:22190776..22190800 (25 bp)	ACACTCTCTACCTGGGATTCGATTG	LOC_Os10g41850
Os.11475.3.S1_at--274--949	1	Chr10:22190772..22190796 (25 bp)	TCTCTACCTGGGATTCGATTGTCGT	LOC_Os10g41850
Os.11475.3.S1_at--969--953	1	Chr10:22190770..22190794 (25 bp)	TCTACCTGGGATTCGATTGTCGTGA	LOC_Os10g41850
Os.11475.3.S1_at--74--177	1	Chr10:22190767..22190791 (25 bp)	ACCTGGGATTCGATTGTCGTGAAAA	LOC_Os10g41850
Os.11475.3.S1_at--1018--653	1	Chr10:22190761..22190785 (25 bp)	GATTCGATTGTCGTGAAAAGACTCA	LOC_Os10g41850
Os.11475.3.S1_at--668--939	1	Chr10:22190758..22190782 (25 bp)	TCGATTGTCGTGAAAAGACTCAGAT	LOC_Os10g41850

Target Sequence

GGACTTGATCCCGAGGCTCGCAGCTGACACTCTCTACCTGGGATTCGATTGTCGTGAAAAGACTCAGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis