Browse Element(s) Details


OsAffx.14308.1.S1_at

Description tigr:9638.m03825
TID=OsAffx.14308.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative subtilisin-like protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4188011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14308.1.S1_at--1003--3931Chr10:22211559..22211673 (25 bp)
CGGCAGCTTCGCAGAGGAGGTGGAC
LOC_Os10g41880
OsAffx.14308.1.S1_at--922--8471Chr10:22211685..22211709 (25 bp)
TGGCGGCGAAGAAAGAGCTCGAACT
LOC_Os10g41880
OsAffx.14308.1.S1_at--922--2153Chr10:22211749..22211773 (25 bp)
ACAGCGTGGAGAGCGCGGAGACGGT
LOC_Os10g41880
OsAffx.14308.1.S1_at--685--5991Chr10:22211766..22211790 (25 bp)
GAGACGGTGCGTCGCGGAGACAGCG
LOC_Os10g41880
OsAffx.14308.1.S1_at--709--7131Chr10:22211913..22211937 (25 bp)
GTCATTGTCGGCGTGTTCCCAGACC
LOC_Os10g41880
OsAffx.14308.1.S1_at--848--10791Chr10:22211917..22211941 (25 bp)
TTGTCGGCGTGTTCCCAGACCACCT
LOC_Os10g41880
OsAffx.14308.1.S1_at--960--3791Chr10:22211993..22212017 (25 bp)
CTGCGAGCCTGCGACTTCAATGGCA
LOC_Os10g41880
OsAffx.14308.1.S1_at--318--3831Chr10:22212001..22212025 (25 bp)
CTGCGACTTCAATGGCACCGTGGAT
LOC_Os10g41880
OsAffx.14308.1.S1_at--466--5691Chr10:22212005..22212029 (25 bp)
GACTTCAATGGCACCGTGGATGCTC
LOC_Os10g41880
OsAffx.14308.1.S1_at--512--10511Chr10:22212008..22212032 (25 bp)
TTCAATGGCACCGTGGATGCTCACC
LOC_Os10g41880
OsAffx.14308.1.S1_at--575--7251Chr10:22212072..22212096 (25 bp)
GTGCGCTTAGGGAACAACCTCTACT
LOC_Os10g41880
Target Sequence 
CGGCAGCTTCGCAGAGGAGGTGGACGTGGAGGCCGGTGGCGGCGAAGAAAGAGCTCGAACTGGGGGCTCCCGAGCTCCGC
AACGGTGGAGGCGCCGGCGGACAGCGTGGAGAGCGCGGAGACGGTGCGTCGCGGAGACAGCGTGGAGAGCGTGGAGACGC
ACACGCCGCAGTTCCTCGGGCTGAGTGCTCCGTCGCCACCGCCGCCACCGCAGGGGAAGCGGTGGTCGTCGTCATCCCAC
GGCGGCTCGGGAGCTGGCTCTGGCGTCATTGTCGGCGTGTTCCCAGACCACCTCTCCTTCAGCGACGCCGGCATGCCGCC
GCCGCCAGCCAAGTGGAAGGGGTGCTGCGAGCCTGCGACTTCAATGGCACCGTGGATGCTCACCGTTGCCGCTAGCACCA
TGGACCGGTCGATACGCACGACGGTGCGCTTAGGGAACAACCTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis