Browse Element(s) Details


OsAffx.9822.1.S1_x_at

Description gb:NM_188962.1
DB_XREF= gi:34905007
GEN=P0456B03.12
TID=OsAffx.9822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0456B03.12 (P0456B03.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g419201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9822.1.S1_x_at--362--1871Chr08:20326058..20326082 (25 bp)
ACGACGCCATCGAGGTCGGAGGATG
NONE
OsAffx.9822.1.S1_x_at--1058--4391Chr08:20326101..20326125 (25 bp)
GCCACAATGGTGAGGTGCGCGTCAT
NONE
OsAffx.9822.1.S1_x_at--212--2231Chr08:20326104..20326128 (25 bp)
ACAATGGTGAGGTGCGCGTCATCCT
NONE
OsAffx.9822.1.S1_x_at--158--3893Chr08:20326140..20326164 (25 bp)
CTGTCGCCATCGTTGTCGTCGTCAT
NONE
OsAffx.9822.1.S1_x_at--129--10831Chr08:20326152..20326176 (25 bp)
TTGTCGTCGTCATCTTTGGCGGTGA
NONE
OsAffx.9822.1.S1_x_at--235--7211Chr08:20326154..20326178 (25 bp)
GTCGTCGTCATCTTTGGCGGTGACA
NONE
OsAffx.9822.1.S1_x_at--419--7211Chr08:20326157..20326181 (25 bp)
GTCGTCATCTTTGGCGGTGACAGGA
NONE
OsAffx.9822.1.S1_x_at--101--5351Chr08:20326197..20326221 (25 bp)
GAAGTTGGTCGGCTGCCGCAACACC
NONE
OsAffx.9822.1.S1_x_at--901--7631Chr08:20326274..20326298 (25 bp)
GGGAGAGGAGCTACGGGCAGCAGCC
NONE
OsAffx.9822.1.S1_x_at--495--3391Chr08:20326298..20326322 (25 bp)
CAGCGGGAGAGAAGCGGCGCACAGT
NONE
OsAffx.9822.1.S1_x_at--783--8051Chr08:20326345..20326369 (25 bp)
GGAGAAGAGCGACGCGCGGGCTCCG
NONE
Target Sequence 
ACGACGCCATCGAGGTCGGAGGATGGCGGGAACGGGGGCGGGGGCCACAATGGTGAGGTGCGCGTCATCCTCCTCCTCGA
ACCTGTCGCCATCGTTGTCGTCGTCATCTTTGGCGGTGACAGGAGAGGAAGCAAAGGGAGAAGTTGGTCGGCTGCCGCAA
CACCTCTTGCCGTCGACCTTGCGGGGGCGGGAGAGGAGACGCGAGTGGCGGCCGGTGGGAGAGGAGCTACGGGCAGCAGC
CAGCGGGAGAGAAGCGGCGCACAGTGGCCGGTGGCCGGTGGCCGGCGGGAGAAGAGCGACGCGCGGGCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9822.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis