Browse Element(s) Details


Os.37950.1.S1_at

Description gb:AK067998.1
DB_XREF= gi:32978016
TID=Os.37950.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative eukaryotic initiation factor subunit (OSJNBa0095C07.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127N17, full insert sequence.
FL= gb:AK067998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4196011/11Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_x_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020Os.16615.1.S1_at7/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.2.S1_x_at5/1110+22258147..22262443expressed protein
LOC_Os10g42024NANA10+22262872..22263237NA

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003676molecular_functionnucleic acid binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37950.1.S1_at--1073--3991Chr10:22234195..22234219 (25 bp)
CGTCGCTGCTGACCCCTGAAAAGGA
LOC_Os10g41960
Os.37950.1.S1_at--376--4311Chr10:22234108..22234132 (25 bp)
CCTTCAACCAGCTGAGCGAGCAGGA
LOC_Os10g41960
Os.37950.1.S1_at--647--6991Chr10:22233954..22233978 (25 bp)
GTACGACACCAAGGAAGTTGAGATT
LOC_Os10g41960
Os.37950.1.S1_at--192--5531Chr10:22233877..22233901 (25 bp)
GAAAAGCTTATGCTAGCATCTGCTG
LOC_Os10g41960
Os.37950.1.S1_at--1021--10011Chr10:22233864..22233888 (25 bp)
TAGCATCTGCTGAGATCTTTTTCTG
LOC_Os10g41960
Os.37950.1.S1_at--968--4471Chr10:22233834..22233858 (25 bp)
GCCTGTCTTAAGTTAATTTCTGCCC
LOC_Os10g41960
Os.37950.1.S1_at--1086--6372Chr05:24649700..24649719 (20 bp)
GATCTTTCTGGTTTCTACTGGTTGA
NONE
Os.37950.1.S1_at--878--7891Chr10:22233748..22233772 (25 bp)
GGTTGATTGTACACTTTGTCCTTGG
LOC_Os10g41960
Os.37950.1.S1_at--348--8711Chr10:22233732..22233756 (25 bp)
TGTCCTTGGATTTTACGGACCAATG
LOC_Os10g41960
Os.37950.1.S1_at--417--1931Chr10:22233718..22233742 (25 bp)
ACGGACCAATGTATTCGAAGATGAA
LOC_Os10g41960
Os.37950.1.S1_at--534--10091Chr10:22233690..22233714 (25 bp)
TTGCGGTTGGCATACTAATTTTAAT
LOC_Os10g41960
Target Sequence 
CGTCGCTGCTGACCCCTGAAAAGGAAGACGAGATTGCGAAGAACCTGAGGAAGTACANGCAAGAAGTACGAGCAAGAGGA
TCAGGATNCCTTCAACCAGCTGAGCGAGCAGGAACGCAAGAGGCGGAANCAGCTTCAGGAGGAATGGGAAGGATGGGTTN
CCAAGTGGAAGCAGCTGCACGAGGNAAGAGAGACCATACAGGATGGAGCTCAGAGACGGGGANGCCAGTGACGATGAGGA
AGAGTACGACACCAAGGAAGTTGAGATTGAAGAGGAGGTAGACGTCCANNNAGAAGAAGTTCCATTCGAGNTGGATCAGG
AGTGAAAAGCTTATGCTAGCATCTGCTGAGATCTTTTTCTGNTGTTGCCTGTCTTAAGTTAATTTCTGCCCCCTTTGCAT
AATAGGCTTTAGAGATCAAGAACACAATTTCTTGATCTTTCTGGTTTCTACTGGTTGATTGTACACTTTGTCCTTGGATT
TTACGGACCAATGTATTCGAAGATGAAAATTTGCGGTTGGCATACTAATTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis