Browse Element(s) Details


Os.4152.1.S1_at

Description gb:AK062449.1
DB_XREF= gi:32972467
TID=Os.4152.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) pathogen-related protein Rir1a (OSJNBa0095C07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C01, full insert sequence.
FL= gb:AK062449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4198011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_x_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020Os.16615.1.S1_at7/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.2.S1_x_at5/1110+22258147..22262443expressed protein
LOC_Os10g42024NANA10+22262872..22263237NA
LOC_Os10g42030OsAffx.18604.1.S1_at10/1110+22265389..22271637expressed protein
LOC_Os10g42030OsAffx.18604.1.S1_x_at9/1110+22265389..22271637expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4152.1.S1_at--137--711Chr10:22245565..22245589 (25 bp)
ATGAGGAAGCAAAGCCGCTCTCCTT
LOC_Os10g41980
Os.4152.1.S1_at--802--2711Chr10:22245571..22245595 (25 bp)
AAGCAAAGCCGCTCTCCTTGTTCAT
LOC_Os10g41980
Os.4152.1.S1_at--833--8811Chr10:22245612..22245636 (25 bp)
TGTTGTGTCCCTCTGCAAGGTGCTC
LOC_Os10g41980
Os.4152.1.S1_at--1007--2891Chr10:22245628..22245652 (25 bp)
AAGGTGCTCCTGTTGGTCCTGGCTC
LOC_Os10g41980
Os.4152.1.S1_at--1073--3911Chr10:22245646..22245670 (25 bp)
CTGGCTCTCATCTGCACCCTGGAAA
LOC_Os10g41980
Os.4152.1.S1_at--313--9031Chr10:22245658..22245682 (25 bp)
TGCACCCTGGAAACTGTCTCAGTAG
LOC_Os10g41980
Os.4152.1.S1_at--263--6151Chr10:22246409..22246433 (25 bp)
GGGCGTACCACTGAATCCACGGTAC
LOC_Os10g41980
Os.4152.1.S1_at--49--1951Chr10:22246418..22246442 (25 bp)
ACTGAATCCACGGTACCCGGCGATT
LOC_Os10g41980
Os.4152.1.S1_at--236--4231Chr10:22246434..22246458 (25 bp)
CCGGCGATTCCTGAAGAACCTTACA
LOC_Os10g41980
Os.4152.1.S1_at--288--1431Chr10:22246448..22246472 (25 bp)
AGAACCTTACATAGGCCGGAGAGGC
LOC_Os10g41980
Os.4152.1.S1_at--1005--4231Chr10:22246463..22246487 (25 bp)
CCGGAGAGGCGATCCGTACACAGGT
LOC_Os10g41980
Target Sequence 
ATGAGGAAGCAAAGCCGCTCTCCTTGTTCATCTTCTTCTTCTGCTGCTGTTGTGTCCCTCTGCAAGGTGCTCCTGTTGGT
CCTGGCTCTCATCTGCACCCTGGAAACTGTCTCAGTAGAAGGAGGGAGAGTGGCAGCAGCAGCATTAGTTGGTGGGGGCG
TACCACTGAATCCACGGTACCCGGCGATTCCTGAAGAACCTTACATAGGCCGGAGAGGCGATCCGTACACAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis