Browse Element(s) Details


OsAffx.30750.1.S1_at

Description gb:NM_197818.1
DB_XREF= gi:37536995
TID=OsAffx.30750.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0095C07.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4192011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30750.1.S1_at--532--10471Chr10:22223060..22223084 (25 bp)
TTACCCCGCGGCCACTAGCGATGGA
LOC_Os10g41920
OsAffx.30750.1.S1_at--665--9991Chr10:22223045..22223069 (25 bp)
TAGCGATGGATCCACTAGTCCCACT
LOC_Os10g41920
OsAffx.30750.1.S1_at--607--10051Chr10:22223030..22223054 (25 bp)
TAGTCCCACTATCGTCGGCGCTAGA
LOC_Os10g41920
OsAffx.30750.1.S1_at--673--10031Chr10:22223009..22223033 (25 bp)
TAGATCCACTCACCGGTCAGCGCAG
LOC_Os10g41920
OsAffx.30750.1.S1_at--152--2891Chr10:22222971..22222995 (25 bp)
AAGGGTGGCGCGATGTCGTCCGAGT
LOC_Os10g41920
OsAffx.30750.1.S1_at--795--6091Chr10:22222950..22222974 (25 bp)
GAGTCATCGGAGTCGTCTCTGTCGC
LOC_Os10g41920
OsAffx.30750.1.S1_at--591--8031Chr10:22222942..22222966 (25 bp)
GGAGTCGTCTCTGTCGCCATCGTTG
LOC_Os10g41920
OsAffx.30750.1.S1_at--677--9211Chr10:22222871..22222895 (25 bp)
TCCACTGCTACTTGCGGCAGTCGCT
LOC_Os10g41920
OsAffx.30750.1.S1_at--362--8271Chr10:22222856..22222880 (25 bp)
GGCAGTCGCTGTCCCCGCTGATGAC
LOC_Os10g41920
OsAffx.30750.1.S1_at--338--9871Chr10:22222755..22222779 (25 bp)
TACAGCAGTAGGTCCTCACCACGAG
LOC_Os10g41920
OsAffx.30750.1.S1_at--912--7791Chr10:22222745..22222769 (25 bp)
GGTCCTCACCACGAGATAGCAACAG
LOC_Os10g41920
Target Sequence 
TTACCCCGCGGCCACTAGCGATGGATCCACTAGTCCCACTATCGTCGGCGCTAGATCCACTCACCGGTCAGCGCAGCGTC
TTCCTTGAGAAGGGTGGCGCGATGTCGTCCGAGTCATCGGAGTCGTCTCTGTCGCCATCGTTGTCGTCCGTGCCACGCTC
CCCTCGAAGTCCAACGACCCCCGCCTTCCTCCACTGCTACTTGCGGCAGTCGCTGTCCCCGCTGATGACCCCTAGCTATG
CCCCCTCCCCTGCCCTTCCCCGTGCCCTGCCGCTCTTCCCTGCTTCCGTTGTCCACCCCGCCGCCTACAGCAGTAGGTCC
TCACCACGAGATAGCAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis