Browse Element(s) Details


OsAffx.20127.1.A1_at

Description gb:NM_197809.1
DB_XREF= gi:37536977
TID=OsAffx.20127.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0057L21.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4182911/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20127.1.A1_at--74--5071Chr10:22181401..22181425 (25 bp)
GCAGCTCCGCTGCAACCACATCAGG
LOC_Os10g41829
OsAffx.20127.1.A1_at--756--5051Chr10:22181442..22181466 (25 bp)
GCAGCTCGTTCGTCGGGTGAAGGAG
LOC_Os10g41829
OsAffx.20127.1.A1_at--671--10571Chr10:22181450..22181474 (25 bp)
TTCGTCGGGTGAAGGAGTCCGACCA
LOC_Os10g41829
OsAffx.20127.1.A1_at--1004--971Chr10:22181462..22181486 (25 bp)
AGGAGTCCGACCAGTGCCGTCTCCA
LOC_Os10g41829
OsAffx.20127.1.A1_at--272--3371Chr10:22181488..22181512 (25 bp)
CACCGGCACGGCGAAGTTGATGTCG
LOC_Os10g41829
OsAffx.20127.1.A1_at--540--2791Chr10:22181516..22181540 (25 bp)
AAGATCCGTCGGTCGGTGATGAACA
LOC_Os10g41829
OsAffx.20127.1.A1_at--175--6311Chr10:22181542..22181566 (25 bp)
GATGAGCTGGTAGTTGTTTCCCTGA
LOC_Os10g41829
OsAffx.20127.1.A1_at--308--1611Chr10:22181546..22181570 (25 bp)
AGCTGGTAGTTGTTTCCCTGAAAGT
LOC_Os10g41829
OsAffx.20127.1.A1_at--1101--10771Chr10:22181555..22181579 (25 bp)
TTGTTTCCCTGAAAGTCCACCGCCT
LOC_Os10g41829
OsAffx.20127.1.A1_at--444--9511Chr10:22181579..22181603 (25 bp)
TCTCTGCTGGCCAAGAACTGCTCCG
LOC_Os10g41829
OsAffx.20127.1.A1_at--255--4391Chr10:22181588..22181612 (25 bp)
GCCAAGAACTGCTCCGGCCAGAACT
LOC_Os10g41829
Target Sequence 
GCAGCTCCGCTGCAACCACATCAGGCCGCCGCCGCCGCCCAGCAGCTCGTTCGTCGGGTGAAGGAGTCCGACCAGTGCCG
TCTCCAGCACCGGCACGGCGAAGTTGATGTCGGGGAAGATCCGTCGGTCGGTGATGAACAGGATGAGCTGGTAGTTGTTT
CCCTGAAAGTCCACCGCCTCTCTGCTGGCCAAGAACTGCTCCGGCCAGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20127.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis