Browse Element(s) Details


Os.22029.1.S1_a_at

Description gb:AF284781.1
DB_XREF= gi:9944966
GEN=Lls1
TID=Os.22029.1
CNT=60
FEA=FLmRNA
TIER=FL+Stack
STK=23
UG=Os.22029 (NCBI UniGene Cluster)
DEF=Oryza sativa LLS1 protein (Lls1) mRNA, complete cds.
PROD=LLS1 protein
FL= gb:AF284781.1 gb:AK071899.1 gb:AK065124.1 gb:AK062219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4178011/11chlorophyll a oxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009055molecular_functionelectron carrier activity
GO:0016630molecular_functionprotochlorophyllide reductase activity
GO:0046407molecular_functionchlorophyll a oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22029.1.S1_a_at--165--4811Chr10:22153776..22153800 (25 bp)
GCTCGGGCAGCAAGAACGGATGATC
LOC_Os10g41780
Os.22029.1.S1_a_at--11--5471Chr10:22153763..22153787 (25 bp)
GAACGGATGATCAATGGCGCAAATG
LOC_Os10g41780
Os.22029.1.S1_a_at--1052--6451Chr10:22153755..22153779 (25 bp)
GATCAATGGCGCAAATGTCTGGAAC
LOC_Os10g41780
Os.22029.1.S1_a_at--1115--6071Chr10:22153666..22153690 (25 bp)
GAGTAGACAGGTTGCCATTCAGTAA
LOC_Os10g41780
Os.22029.1.S1_a_at--404--831Chr10:22153485..22153509 (25 bp)
ATGGTTGGTTCACCATCTCCCTGAG
LOC_Os10g41780
Os.22029.1.S1_a_at--298--471Chr10:22153471..22153495 (25 bp)
ATCTCCCTGAGCTTCGTTGCAGATT
LOC_Os10g41780
Os.22029.1.S1_a_at--60--10631Chr10:22153459..22153483 (25 bp)
TTCGTTGCAGATTGAATTGGGTTCT
LOC_Os10g41780
Os.22029.1.S1_a_at--13--10511Chr10:22153378..22153402 (25 bp)
TTAAGTGTACACTAGCGACAGCATC
LOC_Os10g41780
Os.22029.1.S1_a_at--16--10331Chr10:22153294..22153318 (25 bp)
TTTACCCATGTAAAAGTCGATCGCA
LOC_Os10g41780
Os.22029.1.S1_a_at--277--2331Chr10:22153282..22153306 (25 bp)
AAAGTCGATCGCATGTCACGCTATG
LOC_Os10g41780
Os.22029.1.S1_a_at--550--9351Chr10:22153274..22153298 (25 bp)
TCGCATGTCACGCTATGATGCATAT
LOC_Os10g41780
Target Sequence 
GCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTATCCGGT
ATCGGTTGTGGAGAGACGCCATTGAGAGGGGAGTAGACAGGTTGCCATTCAGTAACCAAAGTGAGAGTGGATCATAGTAG
CTGCATTGCCAATAGCCTCTTTTCAATTCTTGTCGTATTTCTTGGCGAGATGAAGATGAAGATGAAGATGATGATGGCCA
GAACTAGTCAGTGGATGTATATGCACAGTTTGTTTAGGCGTGCGTCCCTGCATGGTTGGTTCACCATCTCCCTGAGCTTC
GTTGCAGATTGAATTGGGTTCTGGAGAGGAAAGGCTAATGGAAGGAGAGAATGATAGGCGACGTCATTCTGTGTAATTTT
AAGTGTACACTAGCGACAGCATCACGGGATGCAATTGTAATCTGAGGTTGATTTGTTTTTCTTCTTTTTTTTTTTCNTTC
CTCCCCTTTTACCCATGTAAAAGTCGATCGCATGTCACGCTATGATGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22029.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis