Browse Element(s) Details


Os.46061.1.S1_at

Description gb:AK101687.1
DB_XREF= gi:32986896
TID=Os.46061.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033059A21, full insert sequence.
FL= gb:AK101687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4173010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41670NANA10+22113302..22114156hypothetical protein
LOC_Os10g41689OsAffx.30473.1.S1_x_at11/1110+22116469..22117530Photosystem II D2 protein, putative
LOC_Os10g41710Os.9219.1.S1_at10/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41710Os.49478.1.S1_at1/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46061.1.S1_at--885--1331Chr10:22135712..22135736 (25 bp)
AGAGGTGGGTCTGCACTCAGTGCAA
LOC_Os10g41730
Os.46061.1.S1_at--764--4931Chr10:22135782..22135806 (25 bp)
GCTTGGATGGGCTACGGACTTTATG
LOC_Os10g41730
Os.46061.1.S1_at--1073--5071NONE
GCACCAGGCCGAGTATGCACTAAAA
NONE
Os.46061.1.S1_at--221--10631Chr10:22136158..22136178 (21 bp)
TTCGCTGACATGGACGAGCAGTTCC
LOC_Os10g41730
Os.46061.1.S1_at--299--1531Chr10:22136334..22136357 (24 bp)
AGCAGTTCCAGTGACATTGCCGCGA
LOC_Os10g41730
Os.46061.1.S1_at--963--4211Chr10:22136352..22136376 (25 bp)
CCGCGATGCGTCAACTCTTAGTAGA
LOC_Os10g41730
Os.46061.1.S1_at--794--2271Chr10:22136533..22136557 (25 bp)
AAATCTGTTGATGTACTTGCACGAT
LOC_Os10g41730
Os.46061.1.S1_at--87--31Chr10:22136562..22136586 (25 bp)
ATTGGAAGCACTATGCCCTGGAGTC
LOC_Os10g41730
Os.46061.1.S1_at--907--6791Chr10:22136609..22136633 (25 bp)
GTTTTGATGTACTTGCATGCCCAGA
LOC_Os10g41730
Os.46061.1.S1_at--770--8511Chr10:22136675..22136699 (25 bp)
TGGAATTGCTGTGTCTGGCTGCCAG
LOC_Os10g41730
Os.46061.1.S1_at--1124--5251Chr10:22136825..22136849 (25 bp)
GAATGCACATTTTCATGTCCTGGAG
LOC_Os10g41730
Target Sequence 
AGAGGTGGGTCTGCACTCAGTGCAAAACAGATGCAGTTACAAGTGGGAATTTTGCCAACTATAGCAGACTGCTTGGATGG
GCTACGGACTTTATGTGAAATGCACCAGGCCGAGTATGCACTAAAATCATCAGTCATCTCTTCGCTGACATGGACGAGCA
GTTCCAGTGACATTGCCGCGATGCGTCAACTCTTAGTAGACCAGCCAAACATACCAAAAGATGAAGTGCAAGCTATTTTT
GACATTATATTCGCAGATGAAATCTGTTGATGTACTTGCACGATTGCTATTGGAAGCACTATGCCCTGGAGTCCTGGACA
TGTTGACATCATTATGTTTTGATGTACTTGCATGCCCAGATGGCCAGATGAACCAAAGATGCTGATGCACTGTAACAAAG
CTGGAATTGCTGTGTCTGGCTGCCAGCAAGAGAGTAGGATGTAGGAGTAGCTTTCTAACATACACTAAAATATCTTCCCT
TTTTTTATCCCCAAATTTTCCTAGTTCTATGTTAACAGTCATGTCCTGGAGACTAAAATTTATCTTTGACTGAATGCACA
TTTTCATGTCCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis