Browse Element(s) Details


Os.9219.1.S1_at

Description gb:BI805585
DB_XREF= gi:15852789
DB_XREF=S041E03
CLONE=S041E03
TID=Os.9219.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chloroplast chaperonin (OSJNBa0057L21.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4171010/11chloroplast chaperonin 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41660Os.46818.1.S1_at11/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41660Os.31623.1.S1_x_at1/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41670NANA10+22113302..22114156hypothetical protein
LOC_Os10g41689OsAffx.30473.1.S1_x_at11/1110+22116469..22117530Photosystem II D2 protein, putative
LOC_Os10g41710Os.9219.1.S1_at10/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41710Os.49478.1.S1_at1/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009570cellular_componentchloroplast stroma
GO:0051087molecular_functionchaperone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9219.1.S1_at--426--9711Chr10:22123656..22123677 (22 bp)
TCAAGTACGACCCTTCCAAGGTGGC
LOC_Os10g41710
Os.9219.1.S1_at--911--9291Chr10:22123811..22123833 (23 bp)
TCCGCCTCGAACAGATTCCTGAGAA
LOC_Os10g41710
Os.9219.1.S1_at--29--5591Chr10:22124900..22124924 (25 bp)
GAAATCTGTTGGAGGAGTCCTGCTG
LOC_Os10g41710
Os.9219.1.S1_at--1074--7251Chr10:22124916..22124940 (25 bp)
GTCCTGCTGCCAAAATCTGCTGTTA
LOC_Os10g41710
Os.9219.1.S1_at--952--8891Chr10:22125051..22125073 (23 bp)
TGAGATTTTGTCTGTTGGTGCTGAT
LOC_Os10g41710
Os.9219.1.S1_at--783--5311NONE
GAAGGTTCTCTTCTCTGACATAAAT
NONE
Os.9219.1.S1_at--155--3671Chr10:22126336..22126557 (25 bp)
CTTATGAGGTGGACCTGGGTACCGA
LOC_Os10g41710
Os.9219.1.S1_at--670--10591Chr10:22126571..22126595 (25 bp)
TTCTGCCGTGAGTCTGATCTGTTAG
LOC_Os10g41710
Os.9219.1.S1_at--379--6411Chr10:22126586..22126610 (25 bp)
GATCTGTTAGCCGTTGTTGAATGAG
LOC_Os10g41710
Os.9219.1.S1_at--743--6111Chr10:22126628..22126652 (25 bp)
GAGTGTCCAATTCCACAGGCTAGAA
LOC_Os10g41710
Os.9219.1.S1_at--350--9491Chr10:22126671..22126695 (25 bp)
TCTGCTATGTGATGGCGATGAGTTG
LOC_Os10g41710
Target Sequence 
TCAAGTACGACCCTTCCAAGGTGGCGCCGCAGTCCGACCGGGTGCTCGTCCGCCTCGAACAGATTCCTGAGAAATCTGTT
GGAGGAGTCCTGCTGCCAAAATCTGCTGTTAAGTTTGAGAGGTATTTGATGGGTGAGATTTTGTCTGTTGGTGCTGATGT
TAATGAAGTTGAAGCTGGAAAGAAGGTTCTCTTCTCTGACATAAATGCTTATGAGGTGGACCTGGGTACCGATGAGAAGC
NCTGNTTCTGCCGTGAGTCTGATCTGTTAGCCGTTGTTGAATGAGTTTTTACTCCAAAATCGGAGTGTCCAATTCCACAG
GCTAGAACAAATCCCAAATTTATTATCTGCTATGTGATGGCGATGAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis