Browse Element(s) Details


Os.49139.1.S1_at

Description gb:AK103373.1
DB_XREF= gi:32988582
TID=Os.49139.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127B07, full insert sequence.
FL= gb:AK103373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4174911/11CrcB-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41689OsAffx.30473.1.S1_x_at11/1110+22116469..22117530Photosystem II D2 protein, putative
LOC_Os10g41710Os.9219.1.S1_at10/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41710Os.49478.1.S1_at1/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49139.1.S1_at--720--8491Chr10:22139994..22140018 (25 bp)
TGGCTTCCCGTTGGAACACTTGCAG
LOC_Os10g41749
Os.49139.1.S1_at--127--5091Chr10:22139973..22139997 (25 bp)
GCAGCCAATGTTCTTGCAGCAGCAA
LOC_Os10g41749
Os.49139.1.S1_at--376--5071Chr10:22139943..22139967 (25 bp)
GCAGCTCTTGCTGTCACGGCTAAAG
LOC_Os10g41749
Os.49139.1.S1_at--567--9771Chr10:22139773..22139797 (25 bp)
TAATGGCATACAGCTCGGTTTCCTC
LOC_Os10g41749
Os.49139.1.S1_at--659--7871Chr10:22139757..22139781 (25 bp)
GGTTTCCTCGGTTGCTTGAGCACAG
LOC_Os10g41749
Os.49139.1.S1_at--245--10291Chr10:22139724..22139748 (25 bp)
TTTGCTGCTGAAGTTTACACCATGA
LOC_Os10g41749
Os.49139.1.S1_at--338--3651Chr10:22139653..22139677 (25 bp)
CTTCGTTCTCTCATTTGTGCTAGGA
LOC_Os10g41749
Os.49139.1.S1_at--798--6491Chr10:22139623..22139647 (25 bp)
GATATACTCAGTGCCGGTGTGGGTA
LOC_Os10g41749
Os.49139.1.S1_at--714--6491Chr10:22139588..22139612 (25 bp)
GATAGCATCGTCACCAGTTGCAGAA
LOC_Os10g41749
Os.49139.1.S1_at--960--5211Chr10:22139470..22139494 (25 bp)
GAATTTCATTTCAACTGCCACGACG
LOC_Os10g41749
Os.49139.1.S1_at--168--5751Chr10:22139449..22139473 (25 bp)
GACGGAATTTAGTACTGCACCATAG
LOC_Os10g41749
Target Sequence 
TGGCTTCCCGTTGGAACACTTGCAGCCAATGTTCTTGCAGCAGCAATCATGGCAGCTCTTGCTGTCACGGCTAAAGCGGA
AAATACAAGACGATTGACTACTGTTCTTAATGGCATACAGCTCGGTTTCCTCGGTTGCTTGAGCACAGTATCAACTTTTG
CTGCTGAAGTTTACACCATGAGAAGAAGTGGTCAGATTGCAAGGGCATTTGTATATGCTGCAGCCACCTTCGTTCTCTCA
TTTGTGCTAGGAACTCTGATATACTCAGTGCCGGTGTGGGTAGAGCATTACTGATAGCATCGTCACCAGTTGCAGAATTG
GAACCTTTGATGGTTTAGCAATTTGCTAATCCAAGTAGCTTAGATAATACAATCTAGAAACAAGCTTGCAAAGAAAAGCT
TGGAACGCGGGAATTTCATTTCAACTGCCACGACGGAATTTAGTACTGCACCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis