Browse Element(s) Details


Os.17037.1.S1_a_at

Description gb:AK071153.1
DB_XREF= gi:32981176
TID=Os.17037.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ARG1 protein (OJ1041F02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078H24, full insert sequence.
FL= gb:AK071153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1560011/11expressed protein
LOC_Os10g417601/11chlorophyll a oxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed
LOC_Os03g15590Os.22416.1.S1_at11/113+8576188..8579649Eukaryotic translation initiation factor 4E type 3, putative, expressed
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016630molecular_functionprotochlorophyllide reductase activity
GO:0046407molecular_functionchlorophyll a oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17037.1.S1_a_at--630--3153Chr12:19606731..19606755 (25 bp)
AATTCCTCGCCGGATCTGACAGTTT
NONE
Os.17037.1.S1_a_at--733--452Chr01:13435966..13435990 (25 bp)
ATCTGACAGTTTGACCGGTGGAGAA
NONE
Os.17037.1.S1_a_at--1142--5331Chr03:8587495..8587519 (25 bp)
GAAGTTGGCCGTTGAGATCTCCATC
LOC_Os03g15600
Os.17037.1.S1_a_at--268--6651Chr03:8587485..8587509 (25 bp)
GTTGAGATCTCCATCAAACCTGTCC
LOC_Os03g15600
Os.17037.1.S1_a_at--635--9492Chr01:13436096..13436120 (25 bp)
TCTGCGCATGGTCTGTGACAGCTTG
NONE
Os.17037.1.S1_a_at--453--2313Chr12:19606916..19606940 (25 bp)
AAAGGATTCAGTTCTCTCCTTCCTG
NONE
Os.17037.1.S1_a_at--861--4313Chr12:19606933..19606957 (25 bp)
CCTTCCTGTTCTATTCTTTCAGCAA
NONE
Os.17037.1.S1_a_at--571--9551Chr03:8587361..8587385 (25 bp)
TCTTTCAGCAATGGTTTAGGTCAAC
LOC_Os03g15600
Os.17037.1.S1_a_at--503--2452Chr10:22146710..22146732 (22 bp)
AACAAAGGTTCAGGGCCTGTTCACT
LOC_Os10g41760
Os.17037.1.S1_a_at--372--1111Chr03:8587158..8587182 (25 bp)
AGTGAACATGCCCTCAGTTCTTATC
LOC_Os03g15600
Os.17037.1.S1_a_at--25--10693Chr01:13436235..13436259 (25 bp)
TTCCAGTTCTCCTTTTGTCTTGAAT
NONE
Target Sequence 
AATTCCTCGCCGGATCTGACAGTTTGACCGGTGGAGAAAGAAGAAGCGGGCGGCCCGCGAGGATGGAGGAAGCGGATTGG
CAGAAGTTGGCCGTTGAGATCTCCATCAAACCTGTCCCCTTCAAGCATCCGGGTCCGACGTCCTCTGCGCATGGTCTGTG
ACAGCTTGGTATAATGAAGAATTAGAAAGGATTCAGTTCTCTCCTTCCTGTTCTATTCTTTCAGCAATGGTTTAGGTCAA
CACAAAAAATTTGGTCGAGTTAAGCAACAAAGGTTCAGGGCCTGTTCACTTTGATGCCATTTTCAACCTTACCAAATTTT
GGTAACTTATATAAGAAATCTTGCCAGTTGCCAAAATTTTGGCATAGTTGCCAAAATTTCGGCAATGTCAAAATTTGGTA
AGGATTTTTTTGGCATCAAAGTGAACATGCCCTCAGTTCTTATCCTTCCAGTTCTCCTTTTGTCTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17037.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis