Browse Element(s) Details


Os.17037.1.S2_a_at

Description gb:CB671899
DB_XREF= gi:29675624
DB_XREF=OSJNEe05K23.r
CLONE=OSJNEe05K23
TID=Os.17037.1
CNT=7
FEA=FLmRNA
TIER=ConsEnd
STK=2
UG=Os.17037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ARG1 protein (OJ1041F02.6), mRNA
FL= gb:AK071153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1560011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed
LOC_Os03g15590Os.22416.1.S1_at11/113+8576188..8579649Eukaryotic translation initiation factor 4E type 3, putative, expressed
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17037.1.S2_a_at--341--9473Chr12:19608172..19608192 (21 bp)
TCTGCAGGCATCCAAGCTGAGGTGA
NONE
Os.17037.1.S2_a_at--957--3193Chr12:19608224..19608248 (25 bp)
CAATGAAAGCCTTGTTGCTGGTATA
NONE
Os.17037.1.S2_a_at--710--232Chr12:19608246..19608270 (25 bp)
ATATTTCTTCATTTTGCCGGTGCAA
NONE
Os.17037.1.S2_a_at--889--10692Chr12:19608259..19608283 (25 bp)
TTGCCGGTGCAAGACCCACACTGGT
NONE
Os.17037.1.S2_a_at--329--7772Chr01:13437499..13437523 (25 bp)
GGTCTTCCAGACCACGGAATGGTAG
NONE
Os.17037.1.S2_a_at--223--1093Chr12:19608315..19608339 (25 bp)
AGGGCTGCAGCAGGGTGACACACCA
NONE
Os.17037.1.S2_a_at--896--2153Chr12:19608334..19608358 (25 bp)
ACACCAGCACCACGGTTATTGGATT
NONE
Os.17037.1.S2_a_at--956--9632Chr12:19608358..19608383 (25 bp)
TCAGGAGTTGCCAAGGAGCAGCAAT
NONE
Os.17037.1.S2_a_at--1029--6533Chr12:19608389..19608413 (25 bp)
GATTAGCTTCCACCTTTAATTTTGC
NONE
Os.17037.1.S2_a_at--551--9731Chr03:8585657..8585771 (25 bp)
TAATTTTGCTGGCAGGTACCTAGAT
LOC_Os03g15600
Os.17037.1.S2_a_at--351--9492Chr01:13437807..13437831 (25 bp)
TCTGCTCTGTACTGCTTTGCTCTGC
NONE
Target Sequence 
TCTGCAGGCATCCAAGCTGAGGTGAATCACATGAGACAAAATGGCAGTCTTGCTTTCAATGAAAGCCTTGTTGCTGGTAT
ATTTCTTCATTTTGCCGGTGCAAGACCCACACTGGTCTTCCAGACCACGGAATGGTAGTGCATCAATAGGGCTGCAGCAG
GGTGACACACCAGCACCACGGTTATTGGATTCAGGAGTTGCCAAGGAGCAGCAATTAAATGATTAGCTTCCACCTTTAAT
TTTGCTGGCAGGTACCTAGATTCAATGCAAGGGTCAGGGTGTTATCCCAGGCTTCATGGACAACTCCGTCGCCTTGAGGA
ANTAAGCCTCCTCCGTCCCTCCATATGTATTTCCTCCTCTGCTCTGTACTGCTTTGCTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17037.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis