Browse Element(s) Details


OsAffx.22457.1.S1_x_at

Description gb:NM_186533.1
DB_XREF= gi:34900151
TID=OsAffx.22457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OJ1779_B07.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g156301/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15590Os.22416.1.S1_at11/113+8576188..8579649Eukaryotic translation initiation factor 4E type 3, putative, expressed
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22457.1.S1_x_at--736--8372Chr07:6374578..6374602 (25 bp)
GGCGAGGAGGAGAAGCCGTCCGCTC
NONE
OsAffx.22457.1.S1_x_at--520--5692Chr07:6374645..6374669 (25 bp)
GACCCCGGCCAGATCCAACGTGAAG
NONE
OsAffx.22457.1.S1_x_at--1069--4411Chr07:6374652..6374676 (25 bp)
GCCAGATCCAACGTGAAGCCGCGGA
NONE
OsAffx.22457.1.S1_x_at--21--3411Chr07:6374654..6374678 (25 bp)
CAGATCCAACGTGAAGCCGCGGAAG
NONE
OsAffx.22457.1.S1_x_at--1016--572Chr07:6374657..6374681 (25 bp)
ATCCAACGTGAAGCCGCGGAAGCCG
NONE
OsAffx.22457.1.S1_x_at--995--3931Chr07:6374673..6374697 (25 bp)
CGGAAGCCGCCGACGACGACAAGAA
NONE
OsAffx.22457.1.S1_x_at--170--2751Chr07:6374696..6374720 (25 bp)
AAGAAGCAGGCGCAGGTCAAGCCCC
NONE
OsAffx.22457.1.S1_x_at--852--1031Chr07:6374809..6374833 (25 bp)
AGGTGGAGGCGTCCCTCGGTGAGGT
NONE
OsAffx.22457.1.S1_x_at--994--8532Chr07:6374842..6374866 (25 bp)
TGGAGCCGCCTGAGCAGCAGCAGCC
NONE
OsAffx.22457.1.S1_x_at--445--991Chr07:6374913..6374937 (25 bp)
AGGAGGACGCCAGAGCTGCAGCCTT
NONE
OsAffx.22457.1.S1_x_at--6--9292Chr07:6374966..6374990 (25 bp)
TCCCACCGTCGGGAAAGGCGTGGCG
NONE
Target Sequence 
GGCGAGGAGGAGAAGCCGTCCGCTCCCGCCGCCGGCCGCCGTCGGCTTCGAGCCATTCACTCCCGCCGACCCCGGCCAGA
TCCAACGTGAAGCCGCGGAAGCCGCCGACGACGACAAGAAGAAGCAGGCGCAGGTCAAGCCCCCGCCGCACCTGCACCCG
CACCTCCTCCGTGCCGCCGCCGGCGGCCCGGCCCACCCGCTCCTCCTCCTCGCGGCGGCGGCGGCTGCTCGAGGTGGAGG
CGTCCCTCGGTGAGGTCGCCGCGGTGGAGCCGCCTGAGCAGCAGCAGCCGGAGAAGGAGGCGCGGCGAGGGAGGCGACGA
GGACGACGGGAGGCGAGGAGGACGCCAGAGCTGCAGCCTTTCCCCTCCTCCTCCGCCGCCCCCGCCTCTCCCACCGTCGG
GAAAGGCGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22457.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis