Browse Element(s) Details


Os.22416.1.S1_at

Description gb:AK059989.1
DB_XREF= gi:32970007
TID=Os.22416.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A08, full insert sequence.
FL= gb:AK059989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1559011/11Eukaryotic translation initiation factor 4E type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15570Os.15814.1.S1_at8/113+8551931..8556481Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed
LOC_Os03g15590Os.22416.1.S1_at11/113+8576188..8579649Eukaryotic translation initiation factor 4E type 3, putative, expressed
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0009615biological_processresponse to virus
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000339molecular_functionRNA cap binding
GO:0000340molecular_functionRNA 7-methylguanosine cap binding
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22416.1.S1_at--962--3331Chr03:8578984..8579008 (25 bp)
CACCGACCTGCATCTTTTCAAGGAG
LOC_Os03g15590
Os.22416.1.S1_at--1025--2731Chr03:8578793..8578817 (25 bp)
AAGAAGACCGTCTCTGGTCGTTTCT
LOC_Os03g15590
Os.22416.1.S1_at--450--4631Chr03:8576640..8576664 (25 bp)
GCGTTGTACTCAGTGTTCGTTTCAA
LOC_Os03g15590
Os.22416.1.S1_at--670--2071Chr03:8576610..8576634 (25 bp)
ACATTCTAAGTGTCTGGAACCGTAA
LOC_Os03g15590
Os.22416.1.S1_at--479--8171Chr03:8576595..8576619 (25 bp)
GGAACCGTAATGCATCTGACCACCA
LOC_Os03g15590
Os.22416.1.S1_at--401--3851Chr03:8576499..8576604 (25 bp)
CTGACCACCAGGCTGTGATGACATT
LOC_Os03g15590
Os.22416.1.S1_at--383--2791Chr03:8576461..8576485 (25 bp)
AAGAGGCATCTGAAGCTGCCACACA
LOC_Os03g15590
Os.22416.1.S1_at--1099--4771Chr03:8576447..8576471 (25 bp)
GCTGCCACACAGCTATCTGATGGAG
LOC_Os03g15590
Os.22416.1.S1_at--842--5431Chr03:8576294..8576318 (25 bp)
GAACCTGTGCTTGCATGGGACTAAA
LOC_Os03g15590
Os.22416.1.S1_at--1004--2631Chr03:8576271..8576295 (25 bp)
AACCTTGCTATGTGTTGTGCATCCA
LOC_Os03g15590
Os.22416.1.S1_at--1015--8811Chr03:8576259..8576283 (25 bp)
TGTTGTGCATCCAAACTCTGTTATG
LOC_Os03g15590
Target Sequence 
CACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCA
TAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGTGNTTGGTGCTAGTGGGTGATCAACTTGATTATAG
TGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACC
ACCAGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCA
CATGATGNCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCATGGTCACATATTTAGC
TGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCATGGGACTAAACCTTGCTATGTGTTG
TGCATCCAAACTCTGTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis