Browse Element(s) Details


Os.11264.1.S1_at

Description gb:AK061109.1
DB_XREF= gi:32971127
TID=Os.11264.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1041F02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-C07, full insert sequence.
FL= gb:AK104530.1 gb:AK099322.1 gb:AK061109.1 gb:AK099159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1563011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15590Os.22416.1.S1_at11/113+8576188..8579649Eukaryotic translation initiation factor 4E type 3, putative, expressed
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11264.1.S1_at--528--5071Chr03:8603134..8603259 (25 bp)
TCCCCAAAAGTCCAGGTGTCGGTGG
LOC_Os03g15630
Os.11264.1.S1_at--758--7731Chr03:8603255..8603279 (25 bp)
GGTGGATTGCGCGATCGCCATCAGT
LOC_Os03g15630
Os.11264.1.S1_at--425--1131Chr03:8603277..8603301 (25 bp)
AGTCCGAGGAGGCAGTCACTGACAT
LOC_Os03g15630
Os.11264.1.S1_at--256--2731Chr03:8603304..8603328 (25 bp)
AAGCAATGTGGCGTGGATGGCCTAA
LOC_Os03g15630
Os.11264.1.S1_at--978--871Chr03:8603320..8603344 (25 bp)
ATGGCCTAAGCGTCTAGCAGCAGCA
LOC_Os03g15630
Os.11264.1.S1_at--1155--9772Chr10:13075016..13075043 (24 bp)
TAAGTGGATGTGACCCGTGTTTGTC
NONE
Os.11264.1.S1_at--236--1811Chr03:8603437..8603461 (25 bp)
ACCCGTGTTTGTCGATTCTAATCTC
LOC_Os03g15630
Os.11264.1.S1_at--918--9511Chr03:8603460..8603484 (25 bp)
TCTCTTTCTCTATCTAATCCTGGGT
LOC_Os03g15630
Os.11264.1.S1_at--390--9731Chr03:8603474..8603498 (25 bp)
TAATCCTGGGTTCCGATTCCTGTAC
LOC_Os03g15630
Os.11264.1.S1_at--236--6151Chr03:8603542..8603566 (25 bp)
GAGGTCGCCGCTGATTTTTGTGAAT
LOC_Os03g15630
Os.11264.1.S1_at--615--6531Chr03:8603554..8603578 (25 bp)
GATTTTTGTGAATTACTGTCCGGTA
LOC_Os03g15630
Target Sequence 
TCCCCAAAAGTCCAGGTGTCGGTGGATTGCGCGATCGCCATCAGTCCGAGGAGGCAGTCACTGACATACAAGCAATGTGG
CGTGGATGGCCTAAGCGTCTAGCAGCAGCAACCAACCACCACACCATCGCAGCAACAGCAGCAGCAGAAGAAGAAGAAGG
ATGCAGAAGGCTTAATCTAATGGAGATAGATAAGTGGATGTGACCCGTGTTTGTCGATTCTAATCTCTCTTTCTCTATCT
AATCCTGGGTTCCGATTCCTGTACGTGGGGGGTAAATTTTGAGCTCTCTCACCTCACCCTAGAGGAGGAGGTCGCCGCTG
ATTTTTGTGAATTACTGTCCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis