Browse Element(s) Details


Os.15443.1.S1_x_at

Description gb:AK070551.1
DB_XREF= gi:32980575
TID=Os.15443.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061L19, full insert sequence.
FL= gb:AK070551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1565011/11Vacuolar sorting protein 9 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15443.1.S1_x_at--856--7811Chr03:8613659..8613683 (25 bp)
GGTCAAGTATGGTTGGCCGTCGAAA
LOC_Os03g15650
Os.15443.1.S1_x_at--794--2571Chr03:8613702..8613726 (25 bp)
AACGGCGGGTCATTCTCTTATATAT
LOC_Os03g15650
Os.15443.1.S1_x_at--767--2871Chr03:8613752..8613776 (25 bp)
AAGTGGGTGCATTGCTGTGCTCCTG
LOC_Os03g15650
Os.15443.1.S1_x_at--403--1351Chr03:8613842..8613866 (25 bp)
AGAGATTCTCTTATATCAGCGTCGA
LOC_Os03g15650
Os.15443.1.S1_x_at--849--8971Chr03:8613889..8613913 (25 bp)
TGAAGCAAAGCTCCTTGTCCCGACG
LOC_Os03g15650
Os.15443.1.S1_x_at--781--4071Chr03:8613909..8613933 (25 bp)
CGACGTTCGTTCATTGATCCTTTGG
LOC_Os03g15650
Os.15443.1.S1_x_at--1110--6351Chr03:8613924..8613948 (25 bp)
GATCCTTTGGTTATGGACTCTTCAA
LOC_Os03g15650
Os.15443.1.S1_x_at--1032--10771Chr03:8614059..8614083 (25 bp)
TTGATCGTCTTCTAGTTGTTGTCTT
LOC_Os03g15650
Os.15443.1.S1_x_at--280--9971Chr03:8614104..8614128 (25 bp)
TACCGATGTTCGTCTTCTACAGATT
LOC_Os03g15650
Os.15443.1.S1_x_at--534--10171Chr03:8614132..8614156 (25 bp)
TATCACCGGTGTTTTGAGCACCTCA
LOC_Os03g15650
Os.15443.1.S1_x_at--16--5951Chr03:8614147..8614171 (25 bp)
GAGCACCTCAACTTCATTTGTTTGG
LOC_Os03g15650
Target Sequence 
GGTCAAGTATGGTTGGCCGTCGAAATACANGGGAAAACGTTGTCAACGGCGGGTCATTCTCTTATATATCAAGGGGTGAC
AACTGGTTACAGAGAAGTGGGTGCATTGCTGTGCTCCTGAAGCCANCAAAATGTAAATGCTGGAAACTAGAATATAGAGA
TTCAAGTCCCNTGGAAACTAGAATATAGAGATTCTCTTATATCAGCGTCGAGGAAGATCAAGATTCATTCTGCTGAAGCA
AAGCTCCTTGTCCCGACGTTCGTTCATTGATCCTTTGGTTATGGACTCTTCAAGTTTGATTTTGCGGTTAATACCATTTT
GGTAAACCATTTTACTTTTGTAGTTCAAATTAAAATATCCATATGTGAAATTAGATCCAAGAGAAAATGGCATGAAACAT
AATTTGATCGTCTTCTAGTTGTTGTCTTTAGCTGCTAGTACTAGTGCATACCGATGTTCGTCTTCTACAGATTAGTTATC
ACCGGTGTTTTGAGCACCTCAACTTCATTTGTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15443.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis