Browse Element(s) Details


Os.17037.3.S1_x_at

Description gb:NM_187517.1
DB_XREF= gi:34902119
GEN=OJ1041F02.6
TID=Os.17037.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17037 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ARG1 protein (OJ1041F02.6), mRNA.
PROD=putative ARG1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g156009/11expressed protein
LOC_Os01g328701/11Chaperone protein dnaJ 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed
LOC_Os03g15590Os.22416.1.S1_at11/113+8576188..8579649Eukaryotic translation initiation factor 4E type 3, putative, expressed
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified
LOC_Os03g15630Os.11264.1.S1_at11/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15630OsAffx.22457.1.S1_x_at1/113+8602374..8603617Harpin-induced protein 1 containing protein, expressed
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009958biological_processpositive gravitropism
GO:0008092molecular_functioncytoskeletal protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17037.3.S1_x_at--618--9651Chr03:8587936..8587960 (25 bp)
TCACCTTGTGGCAGCACCGCCGAGG
LOC_Os03g15600
Os.17037.3.S1_x_at--414--3951NONE
CGGAGCCGGCACAGGCTGACAAGAA
NONE
Os.17037.3.S1_x_at--593--3491Chr03:8586967..8586990 (24 bp)
CAGGCTGACAAGAAGTGTGCTCTTT
LOC_Os03g15600
Os.17037.3.S1_x_at--308--2872Chr10:1001214..1001235 (22 bp)
AAGTGTGCTCTTTTTTATGGTGTAA
NONE
Os.17037.3.S1_x_at--338--8994Chr12:19607220..19607244 (25 bp)
TGAAGAACAAGCTCGGTCAGGCATT
NONE
Os.17037.3.S1_x_at--374--1594Chr12:19607229..19607253 (25 bp)
AGCTCGGTCAGGCATTGTAGTCAGA
NONE
Os.17037.3.S1_x_at--1096--6931Chr03:8586898..8586922 (25 bp)
GTAGTCAGAGTCAACTCAGCCGCAC
LOC_Os03g15600
Os.17037.3.S1_x_at--382--7351Chr03:8586753..8586894 (25 bp)
GTGAATTTAAGCTACTTTTCTTCGA
LOC_Os03g15600
Os.17037.3.S1_x_at--70--832Chr12:19607434..19607458 (25 bp)
ATGGAGGTTATGGACTAGCTCTGCA
NONE
Os.17037.3.S1_x_at--324--5691NONE
GACTAGCTCTGCAGGTACCTAGATT
NONE
Os.17037.3.S1_x_at--545--9731Chr03:8585632..8585656 (25 bp)
TCAATGCAAGGGTCAGGGTGTTATC
LOC_Os03g15600
Target Sequence 
TCACCTTGTGGCAGCACCGCCGAGGGCAGGACGGGCGAGGCGCCCGTCGGAGCCGGCACAGGCTGACAAGAAGTGTGCTC
TTTTTTATGGTGTAACAATAAGTGAAGAACAAGCTCGGTCAGGCATTGTAGTCAGAGTCAACTCAGCCGCACAAAGTGAA
TTTAAGCTACTTTTCTTCGAACAAGAATTTGATGGAGGTTATGGACTAGCTCTGCAGGTACCTAGATTCAATGCAAGGGT
CAGGGTGTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17037.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis