Browse Element(s) Details


Os.45877.1.S1_at

Description gb:NM_187516.1
DB_XREF= gi:34902117
TID=Os.45877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1041F02.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1041F02.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1558011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15550Os.51710.1.S1_at11/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15550OsAffx.29890.1.A1_at1/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15560Os.22830.1.S1_at7/113+8547498..8550881expressed protein
LOC_Os03g15570Os.15814.1.S1_at8/113+8551931..8556481Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed
LOC_Os03g15590Os.22416.1.S1_at11/113+8576188..8579649Eukaryotic translation initiation factor 4E type 3, putative, expressed
LOC_Os03g15600Os.17037.1.S1_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.1.S2_a_at11/113+8584994..8588158expressed protein
LOC_Os03g15600Os.17037.3.S1_x_at9/113+8584994..8588158expressed protein
LOC_Os03g15600Os.24485.1.A1_at2/113+8584994..8588158expressed protein
LOC_Os03g15600Os.27342.1.S2_at1/113+8584994..8588158expressed protein
LOC_Os03g15610Os.28943.1.S1_x_at1/113+8590513..8593695retrotransposon protein, putative, unclassified
LOC_Os03g15620NANA3+8594681..8600509retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45877.1.S1_at--592--1151Chr03:8562955..8562979 (25 bp)
AGTCTGATGGCTTCTCGTACAGCAA
LOC_Os03g15580
Os.45877.1.S1_at--966--6251Chr03:8562921..8562945 (25 bp)
GATGGGATCTATCTATGCTCAGCAT
LOC_Os03g15580
Os.45877.1.S1_at--705--9091Chr03:8562906..8562930 (25 bp)
TGCTCAGCATGGTCTTTGCATTTTT
LOC_Os03g15580
Os.45877.1.S1_at--1133--9051Chr03:8562890..8562914 (25 bp)
TGCATTTTTCTACAGGATTCCCAAG
LOC_Os03g15580
Os.45877.1.S1_at--956--4671Chr03:8562820..8562844 (25 bp)
GCGGTACAACTACCACATCTTTGGG
LOC_Os03g15580
Os.45877.1.S1_at--655--7851Chr03:8561781..8561805 (25 bp)
GGTAGTTCCTCCTAAGCTATCTCAG
LOC_Os03g15580
Os.45877.1.S1_at--177--1171Chr03:8561758..8561782 (25 bp)
AGTCACTGAGAGGTCCTGCTTTTGT
LOC_Os03g15580
Os.45877.1.S1_at--1119--5311Chr03:8560972..8560994 (23 bp)
GAAGGTGTCGTCAGCCGAGGCATTA
LOC_Os03g15580
Os.45877.1.S1_at--1103--131Chr03:8560951..8560975 (25 bp)
ATTACTTGAGTTCTGGTGCACTTTC
LOC_Os03g15580
Os.45877.1.S1_at--1042--7331Chr03:8560936..8560960 (25 bp)
GTGCACTTTCACTGTCTGCTGAAGA
LOC_Os03g15580
Os.45877.1.S1_at--127--1131Chr03:8560894..8560918 (25 bp)
AGTGCAGCACTTTCAGCGACAGACG
LOC_Os03g15580
Target Sequence 
AGTCTGATGGCTTCTCGTACAGCAAGCAGCTTGAGATGGGATCTATCTATGCTCAGCATGGTCTTTGCATTTTTCTACAG
GATTCCCAAGCTACAGATGATGGTTTTGTTGATTTTTTACAAGAGTTGTTATTTAGCGGTACAACTACCACATCTTTGGG
TAAATTTGTTAGCTCTGGAATCAGCTGTGGTGATGGATCTGGGAACATTTCCCATGTAAAATACCCAACAAGTTGTATTT
CTAAGAGAAGGGAGCGACAAGCTCGTCTTCGTGAAGTCCTGCTTCCGGTAGTTCCTCCTAAGCTATCTCAGTCACTGAGA
GGTCCTGCTTTTGTTGATTATTTGTCTTCGATGAGTCAGATTTCACAGTTGGAAAATATGCAACTCTCTGAATGTAAAGC
CTCAAGCAAGCAAAGAAGGTGTCGTCAGCCGAGGCATTACTTGAGTTCTGGTGCACTTTCACTGTCTGCTGAAGATATTG
GATTATTAGCACAGTGCAGCACTTTCAGCGACAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis