Browse Element(s) Details


Os.22830.1.S1_at

Description gb:AK067490.1
DB_XREF= gi:32977508
TID=Os.22830.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1041F02.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108L08, full insert sequence.
FL= gb:AK067490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g155607/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15540Os.9942.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15540Os.48014.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15550Os.51710.1.S1_at11/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15550OsAffx.29890.1.A1_at1/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15560Os.22830.1.S1_at7/113+8547498..8550881expressed protein
LOC_Os03g15570Os.15814.1.S1_at8/113+8551931..8556481Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22830.1.S1_at--13--7231Chr03:8550474..8550498 (25 bp)
GTCGACCTCAGCACTGATGTTGAGT
LOC_Os03g15560
Os.22830.1.S1_at--924--411Chr03:8550505..8550529 (25 bp)
ATCATATATCGAATGCCTGCCTGCT
LOC_Os03g15560
Os.22830.1.S1_at--335--3831Chr03:8550521..8550545 (25 bp)
CTGCCTGCTGTGATGTTTTGCTGAT
LOC_Os03g15560
Os.22830.1.S1_at--647--9631Chr03:8550557..8550580 (24 bp)
TCAGTCATTGTCTTGCTTGTCTTAA
LOC_Os03g15560
Os.22830.1.S1_at--579--3431Chr03:8550630..8550654 (25 bp)
CAGAGTGGTAGCTTTTTGCCACAAA
LOC_Os03g15560
Os.22830.1.S1_at--648--3291Chr03:8550651..8550675 (25 bp)
CAAATTGTTGTCTCGTGTACGTCCT
LOC_Os03g15560
Os.22830.1.S1_at--809--8751Chr03:8550666..8550690 (25 bp)
TGTACGTCCTCCAGTTCGAAGATTC
LOC_Os03g15560
Os.22830.1.S1_at--1007--7351NONE
GTGACGGTACCATTGTAGCTTTGTA
NONE
Os.22830.1.S1_at--634--6111Chr03:8550895..8550919 (25 bp)
GAGTCCAATATCCTGATCCATCTTT
NONE
Os.22830.1.S1_at--17--4871NONE
GCTAGTGTGGCAAGTCTGCCTGTTT
NONE
Os.22830.1.S1_at--894--9171Chr06:8103531..8103839 (25 bp)
TGCCTGTTTGGTTCTTTGTACTTTT
NONE
Target Sequence 
GTCGACCTCAGCACTGATGTTGAGTGGAGCCATCATATATCGAATGCCTGCCTGCTGTGATGTTTTGCTGATCCAAAGTC
CAATCAGTCATTGTCTTGCTTGTCTTAATCCCCTCGGCCTCTGGAAAAAGCAATCCAATTGATGTGGGGTTTCACACAGA
GTGGTAGCTTTTTGCCACAAATTGTTGTCTCGTGTACGTCCTCCAGTTCGAAGATTCGTATTGCAAAATCTGTTTGTNGT
AGACATCGTGCAATGAGACAACCGATTGGAGTTGGGGTATGTGACGGTACCATTGTAGCTTTGTATATTATGCCAACATT
GGCAATTCCTNTTGACNCTGGATTTACTTNTNTGCTGATCCNNTAATAACCGTACAAATTTAAAGGCCNCAGGCCTCATT
GCATCGNCAAAGATGACAGGCGAGTCCAATATCCTGATCCATCTTTGAACATTCAGCTTATATGGTTATCGTGGTTTGCA
AAGCAAGAGGAAACTGGCTTGTTTTGGGTTATATAGCTAGTGTGGCAAGTCTGCCTGTTTGGTTCTTTGTACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis