Browse Element(s) Details


Os.9942.1.S1_x_at

Description gb:AK100569.1
DB_XREF= gi:32985778
TID=Os.9942.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105A03, full insert sequence.
FL= gb:AK100569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1554011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15520NANA3+8500409..8506564transposon protein, putative, unclassified
LOC_Os03g15530Os.49571.1.S1_at10/113+8510115..8512124expressed protein
LOC_Os03g15540Os.9942.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15540Os.48014.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15550Os.51710.1.S1_at11/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15550OsAffx.29890.1.A1_at1/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15560Os.22830.1.S1_at7/113+8547498..8550881expressed protein
LOC_Os03g15570Os.15814.1.S1_at8/113+8551931..8556481Mitogen-activated protein kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0030089cellular_componentphycobilisome
GO:0008565molecular_functionprotein transporter activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9942.1.S1_x_at--192--4391Chr03:8526535..8526559 (25 bp)
GCCAAGGCCGTTTCTCATTTGATAT
LOC_Os03g15540
Os.9942.1.S1_x_at--1003--2631Chr03:8526489..8526513 (25 bp)
AACCTATATTGAGTGCTCTGCCACC
LOC_Os03g15540
Os.9942.1.S1_x_at--877--10211Chr03:8526403..8526427 (25 bp)
TATTCAGTTCTTTGGCCTACTGGGA
LOC_Os03g15540
Os.9942.1.S1_x_at--157--5371Chr03:8526352..8526376 (25 bp)
GAAGACCATTTGATTTGCCAGATAT
LOC_Os03g15540
Os.9942.1.S1_x_at--442--2431Chr03:8526313..8526337 (25 bp)
AAAACCGGTTTGGACATCTTCATTG
LOC_Os03g15540
Os.9942.1.S1_x_at--126--7291Chr03:8526256..8526280 (25 bp)
GTGCCAGCAGAGTTGTTTGCGTCGT
LOC_Os03g15540
Os.9942.1.S1_x_at--640--6551Chr03:8526231..8526255 (25 bp)
GATTATGCGATATATTTCTGCCTTT
LOC_Os03g15540
Os.9942.1.S1_x_at--897--8911Chr03:8526139..8526163 (25 bp)
TGAGCTTTTGTTGGTCATCATCCTG
LOC_Os03g15540
Os.9942.1.S1_x_at--1036--3551Chr03:8526124..8526148 (25 bp)
CATCATCCTGGTTTCGATTTTGGTT
LOC_Os03g15540
Os.9942.1.S1_x_at--365--2231Chr03:8526084..8526108 (25 bp)
ACAATTCTTTGCTCGGGTGTACTAC
LOC_Os03g15540
Os.9942.1.S1_x_at--1001--7731Chr03:8526069..8526093 (25 bp)
GGTGTACTACCATTGCTACTATTGT
LOC_Os03g15540
Target Sequence 
GCCAAGGCCGTTTCTCATTTGATATCTGTTTATGGTCAGCAAATGCAACCTATATTGAGTGCTCTGCCACCCGCTCATGC
TAATGCATTAGCATCNATTTNGCCAATNAGGANGATGATCAGCAGAGGAACATCTNATATTCAGTTCTTTGGCCTACTGG
GATGCTTTNTCAGTGGTTTTTACTCACTGAAGACCATTTGATTTGCCAGATATTTATAGATCTGCCAAAAACCGGTTTGG
ACATCTTCATTGGGATATGAAAGTGGATGCAAATGCTGGAAAATGTGCCAGCAGAGTTGTTTGCGTCGTGATTATGCGAT
ATATTTCTGCCTTTTGAGTTATAGTGATCTTTTGTTGGGATGGCTTGTGCGGTGGTTCTGGTTGAAGGAAATGGCCAGCG
GTGAGCTTTTGTTGGTCATCATCCTGGTTTCGATTTTGGTTGCTTGTGTTGAGTTTACAATTCTTTGCTCGGGTGTACTA
CCATTGCTACTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9942.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis