Browse Element(s) Details


Os.50849.1.S1_at

Description gb:AK058971.1
DB_XREF= gi:32968989
TID=Os.50849.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D01, full insert sequence.
FL= gb:AK058971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1569011/11Phosphate carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15710Os.33475.1.S1_at11/113+8643321..8645199Strictosidine synthase family protein, expressed
LOC_Os03g15720Os.11444.1.S1_at11/113+8647119..8650177expressed protein
LOC_Os03g15730Os.11649.1.S1_at11/113+8652651..8655595S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os03g15740Os.15593.1.S1_at11/113+8658231..8661389calcium-binding EF hand family protein, putative, expressed
LOC_Os03g15750Os.33208.1.S1_at11/113+8662824..8666613Longevity-assurance protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50849.1.S1_at--626--2671Chr03:8638690..8638714 (25 bp)
AAGCGGAGTTGACCACATCGCGTAA
LOC_Os03g15690
Os.50849.1.S1_at--571--531Chr03:8638706..8638730 (25 bp)
ATCGCGTAAATGTTGTGCTGAGCTA
LOC_Os03g15690
Os.50849.1.S1_at--1073--8891Chr03:8638724..8638748 (25 bp)
TGAGCTACTACCCTTAATCGGAGTA
LOC_Os03g15690
Os.50849.1.S1_at--195--6311Chr03:8638798..8638822 (25 bp)
GATGACCTGTTGAGCGAATTTGGAA
LOC_Os03g15690
Os.50849.1.S1_at--897--6811Chr03:8638865..8638889 (25 bp)
GTTTTTGTTGCTACCTCTTGAATGA
LOC_Os03g15690
Os.50849.1.S1_at--1006--6131Chr03:8638919..8638943 (25 bp)
GAGGGATGTATTTGGCACATTGCCA
LOC_Os03g15690
Os.50849.1.S1_at--805--5111Chr03:8638933..8638957 (25 bp)
GCACATTGCCAAACTGATCTGATCA
LOC_Os03g15690
Os.50849.1.S1_at--137--31Chr03:8638970..8638994 (25 bp)
ATTGGTCATTCTTGCCTCTGTTGGC
LOC_Os03g15690
Os.50849.1.S1_at--398--9471Chr03:8638986..8639010 (25 bp)
TCTGTTGGCATTTCCTCTGGTAGTT
LOC_Os03g15690
Os.50849.1.S1_at--896--9451Chr03:8639001..8639025 (25 bp)
TCTGGTAGTTTCCATACGACTGTTT
LOC_Os03g15690
Os.50849.1.S1_at--605--1851Chr03:8639016..8639040 (25 bp)
ACGACTGTTTATCCAGCGTACATGA
LOC_Os03g15690
Target Sequence 
AAGCGGAGTTGACCACATCGCGTAAATGTTGTGCTGAGCTACTACCCTTAATCGGAGTAGATGATGGCAGGCAGTTGCTC
TGATTTTCATGAGAGCGGGAACGTAGGAGATGACCTGTTGAGCGAATTTGGAACACAATTTTAAGATTTAGCAGTAGGAA
ATTCACATTCAAGGGGTTTTTGTTGCTACCTCTTGAATGACAGGCAAGTGCAAGGAAGGCAATAAGCTTGAGGGATGTAT
TTGGCACATTGCCAAACTGATCTGATCATCTGATGTTTCAATTGGTCATTCTTGCCTCTGTTGGCATTTCCTCTGGTAGT
TTCCATACGACTGTTTATCCAGCGTACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis