Browse Element(s) Details


Os.5848.1.S1_at

Description gb:AK106060.1
DB_XREF= gi:32991269
TID=Os.5848.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1041F02.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F12, full insert sequence.
FL= gb:AK106060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g157007/11Splicing factor 3A subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15710Os.33475.1.S1_at11/113+8643321..8645199Strictosidine synthase family protein, expressed
LOC_Os03g15720Os.11444.1.S1_at11/113+8647119..8650177expressed protein
LOC_Os03g15730Os.11649.1.S1_at11/113+8652651..8655595S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os03g15740Os.15593.1.S1_at11/113+8658231..8661389calcium-binding EF hand family protein, putative, expressed
LOC_Os03g15750Os.33208.1.S1_at11/113+8662824..8666613Longevity-assurance protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005681cellular_componentspliceosome complex
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5848.1.S1_at--857--8411Chr03:8639477..8639501 (25 bp)
GGCCGCAGCAGTAGATGACCCAAGC
LOC_Os03g15700
Os.5848.1.S1_at--553--6311Chr03:8639464..8639488 (25 bp)
GATGACCCAAGCGACAACAACTGAG
LOC_Os03g15700
Os.5848.1.S1_at--809--3271Chr03:8639450..8639474 (25 bp)
CAACAACTGAGGTCGGGCTACAAAT
LOC_Os03g15700
Os.5848.1.S1_at--61--3211Chr03:8639421..8639445 (25 bp)
CAATGATTGCCTAGTTTGCTGTAGA
LOC_Os03g15700
Os.5848.1.S1_at--238--4731Chr03:8639404..8639428 (25 bp)
GCTGTAGAATGCCTTTTGACCCAAA
LOC_Os03g15700
Os.5848.1.S1_at--883--5571Chr03:8639313..8639337 (25 bp)
GAAATTTTCCACCTTGATACTTTTG
LOC_Os03g15700
Os.5848.1.S1_at--927--6471Chr03:8639289..8639313 (25 bp)
GATACTTCTATTCAAAGCACTTGGT
LOC_Os03g15700
Os.5848.1.S1_at--251--4591NONE
GCGCTTGCACACATGGTTCTGGTAT
NONE
Os.5848.1.S1_at--1022--8571NONE
TGGTTCTGGTATTGTCTGACGTGAC
NONE
Os.5848.1.S1_at--143--51Chr03:8639233..8639258 (25 bp)
ATTGTCTGACGTGACGGTGTGTGCC
NONE
Os.5848.1.S1_at--515--5891NONE
GAGCTGGGTGCTATGCCAATGCCGA
NONE
Target Sequence 
GGCCGCAGCAGTAGATGACCCAAGCGACAACAACTGAGGTCGGGCTACAAATGTTGCAATGATTGCCTAGTTTGCTGTAG
AATGCCTTTTGACCCAAATTTGTATGTTGTCAAATACATTATATATTTACATGTACTCTTAGACTATAGTATTGTCGATT
TTAAGAAATTTTCCACCTTGATACTTTTGATACTTCTATTCAAAGCACTTGGTGTCTATNGCGCTTGCACACATGGTTCT
GGTATTGTCTGACGTGACGGTGTGTGCCCGTGAGCACCGAGCTGGGTGCTATGCCAATGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis