Browse Element(s) Details


Os.33475.1.S1_at

Description gb:AK100452.1
DB_XREF= gi:32985661
TID=Os.33475.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative male fertility protein (Zea mays) (OJ1041F02.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091D01, full insert sequence.
FL= gb:AK100452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1571011/11Strictosidine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15710Os.33475.1.S1_at11/113+8643321..8645199Strictosidine synthase family protein, expressed
LOC_Os03g15720Os.11444.1.S1_at11/113+8647119..8650177expressed protein
LOC_Os03g15730Os.11649.1.S1_at11/113+8652651..8655595S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os03g15740Os.15593.1.S1_at11/113+8658231..8661389calcium-binding EF hand family protein, putative, expressed
LOC_Os03g15750Os.33208.1.S1_at11/113+8662824..8666613Longevity-assurance protein containing protein, expressed
LOC_Os03g15760NANA3+8667439..8671132hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33475.1.S1_at--85--8331Chr03:8643810..8643834 (25 bp)
GGCTGCGAACGCTCTACTTCAAGCT
LOC_Os03g15710
Os.33475.1.S1_at--591--10511Chr03:8643793..8643817 (25 bp)
TTCAAGCTGCCCCTGACGATGCGGA
LOC_Os03g15710
Os.33475.1.S1_at--574--6251Chr03:8643758..8643782 (25 bp)
GATGGTCAGCATGCGGATGCACACC
LOC_Os03g15710
Os.33475.1.S1_at--279--8671Chr03:8643627..8643651 (25 bp)
TGTGGATCGGCACCGTGGCTCATAA
LOC_Os03g15710
Os.33475.1.S1_at--465--6331Chr03:8643590..8643614 (25 bp)
GATCCCTTACCCGTTGGAAGAGCAG
LOC_Os03g15710
Os.33475.1.S1_at--261--5051Chr03:8643561..8643585 (25 bp)
GCAGCAACGTGCTTGGTGATTGATA
LOC_Os03g15710
Os.33475.1.S1_at--704--8771Chr03:8643481..8643505 (25 bp)
TGTTTGCCGGGCCATCATAGAAAGT
LOC_Os03g15710
Os.33475.1.S1_at--77--7411Chr03:8643451..8643475 (25 bp)
GTGATCTCTGGGACTTGATGGCAAA
LOC_Os03g15710
Os.33475.1.S1_at--367--3091Chr03:8643378..8643402 (25 bp)
AATAAGGACATGCATGGACTACCAT
LOC_Os03g15710
Os.33475.1.S1_at--491--10531Chr03:8643349..8643373 (25 bp)
TTCATGTTATGACGCTCCTAAGAGC
LOC_Os03g15710
Os.33475.1.S1_at--866--9771Chr03:8643331..8643355 (25 bp)
TAAGAGCCACAGACCACAGCGATGG
LOC_Os03g15710
Target Sequence 
GGCTGCGAACGCTCTACTTCAAGCTGCCCCTGACGATGCGGACGCTGGGGAAGATGGTCAGCATGCGGATGCACACCCTC
GTCGCGCTCCTCGACGGCGAAGGGGACGTCGTCGAGGTGCTCGAGGACCGGGGCGGCGAGGTGATGCGGCTGGTGAGCGA
GGTGAGGGAGGTGGGGCGCAAGCTGTGGATCGGCACCGTGGCTCATAACCACATCGCCACGATCCCTTACCCGTTGGAAG
AGCAGAGTAGCAGCAACGTGCTTGGTGATTGATACTTTGATAGGCTGGTTTTAGCAGCAACAAAGGTGTACTAGTTGATG
TATTGTTTGTGTTTGCCGGGCCATCATAGAAAGTGCCTGGTGATCTCTGGGACTTGATGGCAAATGTTGGGCAAATTGTG
ATCGAATAAGATTAGTACTAGAGTTATCGTGTAATAAGGACATGCATGGACTACCATGTATTTCATGTTATGACGCTCCT
AAGAGCCACAGACCACAGCGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis