Browse Element(s) Details


Os.38261.1.S1_at

Description gb:CB656268
DB_XREF= gi:29659993
DB_XREF=OSJNEc10G18.f
CLONE=OSJNEc10G18
TID=Os.38261.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mitochondrial phosphate translocator (OJ1041F02.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g156909/11Phosphate carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15710Os.33475.1.S1_at11/113+8643321..8645199Strictosidine synthase family protein, expressed
LOC_Os03g15720Os.11444.1.S1_at11/113+8647119..8650177expressed protein
LOC_Os03g15730Os.11649.1.S1_at11/113+8652651..8655595S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os03g15740Os.15593.1.S1_at11/113+8658231..8661389calcium-binding EF hand family protein, putative, expressed
LOC_Os03g15750Os.33208.1.S1_at11/113+8662824..8666613Longevity-assurance protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38261.1.S1_at--1098--8691Chr03:8636538..8636660 (25 bp)
TGTCCAATCTGAAGGCTTTATAAAG
LOC_Os03g15690
Os.38261.1.S1_at--933--4371Chr03:8636541..8636663 (25 bp)
CCAATCTGAAGGCTTTATAAAGGAC
LOC_Os03g15690
Os.38261.1.S1_at--15--7231NONE
GTCGCCAAGTTCCTTATAGGACCAC
NONE
Os.38261.1.S1_at--1028--6691NONE
GTTCCTTATAGGACCACATCTTTTA
NONE
Os.38261.1.S1_at--783--9231Chr03:8637959..8637978 (20 bp)
TCCTTATAGGACCACATCTTTTAAA
LOC_Os03g15690
Os.38261.1.S1_at--136--8091Chr03:8637962..8638086 (25 bp)
GGACCACATCTTTTAAAATATACTA
LOC_Os03g15690
Os.38261.1.S1_at--730--10171Chr03:8638081..8638104 (24 bp)
TATACTATGGTGAAATTTGCTTGCT
LOC_Os03g15690
Os.38261.1.S1_at--383--7771Chr03:8638088..8638112 (25 bp)
GGTGAAATTTGCTTGCTTTGAGACA
LOC_Os03g15690
Os.38261.1.S1_at--907--5591Chr03:8638091..8638115 (25 bp)
GAAATTTGCTTGCTTTGAGACAATT
LOC_Os03g15690
Os.38261.1.S1_at--911--10271Chr03:8638095..8638119 (25 bp)
TTTGCTTGCTTTGAGACAATTGTTG
LOC_Os03g15690
Os.38261.1.S1_at--456--6651Chr03:8638116..8638140 (25 bp)
GTTGAATTAGTATATAAGCATGCAG
LOC_Os03g15690
Target Sequence 
TGTCCAATCTGAAGGCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTTATAGGACCACATCTTTTAAAAT
ATACTATGGTGAAATTTGCTTGCTTTGAGACAATTGTTGAATTAGTATATAAGCATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis