Browse Element(s) Details


Os.46818.1.S1_at

Description gb:AK109895.1
DB_XREF= gi:32995104
TID=Os.46818.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (OSJNBa0057L21.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F01, full insert sequence.
FL= gb:AK109895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4166011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41620Os.46824.2.S1_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41620Os.46824.1.S1_x_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41640Os.22822.1.S1_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640Os.22822.1.S1_x_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_x_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41650Os.18619.1.S1_at11/1110+22095989..22098088F-box domain containing protein, expressed
LOC_Os10g41660Os.46818.1.S1_at11/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41660Os.31623.1.S1_x_at1/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41670NANA10+22113302..22114156hypothetical protein
LOC_Os10g41689OsAffx.30473.1.S1_x_at11/1110+22116469..22117530Photosystem II D2 protein, putative
LOC_Os10g41710Os.9219.1.S1_at10/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41710Os.49478.1.S1_at1/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46818.1.S1_at--1002--1071Chr10:22106747..22106771 (25 bp)
AGGGCAACGCGTTCCACGGCTTCAT
LOC_Os10g41660
Os.46818.1.S1_at--433--7051Chr10:22106796..22106820 (25 bp)
GTAATTTACCACTCGATCAATGCCC
LOC_Os10g41660
Os.46818.1.S1_at--488--371Chr10:22106811..22106835 (25 bp)
ATCAATGCCCAGTTCACTCGCTCGT
LOC_Os10g41660
Os.46818.1.S1_at--982--4611Chr10:22106853..22106877 (25 bp)
GCGATCGCCGGAGAATTGAATTCAA
LOC_Os10g41660
Os.46818.1.S1_at--988--10111Chr10:22106895..22106919 (25 bp)
TATGAATTTCTGATGCGGCTCGGCT
LOC_Os10g41660
Os.46818.1.S1_at--1123--8311Chr10:22106916..22106940 (25 bp)
GGCTCTGCTTTTGGGCATTCGTGAT
LOC_Os10g41660
Os.46818.1.S1_at--437--10411Chr10:22106975..22106999 (25 bp)
TTTTGGCTGTGAATTCTTGTATTAT
LOC_Os10g41660
Os.46818.1.S1_at--153--10371Chr10:22107001..22107025 (25 bp)
TTTTTTCTTGAGTGCGTGGATTTCG
LOC_Os10g41660
Os.46818.1.S1_at--8--5931Chr10:22107059..22107083 (25 bp)
GATGCCGTACGGATTTGAAAACTGC
LOC_Os10g41660
Os.46818.1.S1_at--989--4891Chr10:22107082..22107106 (25 bp)
GCTTCTTCCTCCGAATTGGAGAATG
LOC_Os10g41660
Os.46818.1.S1_at--742--5131Chr10:22107142..22107166 (25 bp)
GCAAATGAACTGAACTGCCCAATAA
LOC_Os10g41660
Target Sequence 
AGGGCAACGCGTTCCACGGCTTCATGCGCTGGCTCACAGGGGCATACTAGTAATTTACCACTCGATCAATGCCCAGTTCA
CTCGCTCGTCAACCTCGCCGGCGCCGGCGATCGCCGGAGAATTGAATTCAACTGAATTTGAAATGAATTATGAATTTCTG
ATGCGGCTCGGCTCTGCTTTTGGGCATTCGTGATTAGGAGTAATTAATAGTGTCTCCTTTTCTCTTTTTTTTGGCTGTGA
ATTCTTGTATTATTTTTTTCTTGAGTGCGTGGATTTCGAGGGTGGAGGATGCATATGGTGGGAAGGTTTTTGATGCCGTA
CGGATTTGAAAACTGCTTCTTCCTCCGAATTGGAGAATGTCGGCGGGAAGATTGAGGAATTCGGGGACTTTGAGGCAAAT
GAACTGAACTGCCCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis