Browse Element(s) Details


Os.18619.1.S1_at

Description gb:AK105014.2
DB_XREF= gi:42821629
TID=Os.18619.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0057L21.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B12, full insert sequence.
FL= gb:AK105014.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4165011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41600NANA10+22070809..22072066hypothetical protein
LOC_Os10g41610NANA10+22073635..22077231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g41620Os.46824.2.S1_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41620Os.46824.1.S1_x_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41640Os.22822.1.S1_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640Os.22822.1.S1_x_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_x_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41650Os.18619.1.S1_at11/1110+22095989..22098088F-box domain containing protein, expressed
LOC_Os10g41660Os.46818.1.S1_at11/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41660Os.31623.1.S1_x_at1/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41670NANA10+22113302..22114156hypothetical protein
LOC_Os10g41689OsAffx.30473.1.S1_x_at11/1110+22116469..22117530Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18619.1.S1_at--724--8531Chr10:22097507..22097531 (25 bp)
TGGACCCTGCCCTAGATGACAAGGT
LOC_Os10g41650
Os.18619.1.S1_at--893--3171Chr10:22097555..22097579 (25 bp)
AATTGTGCGTCCTTCATGCCAACAG
LOC_Os10g41650
Os.18619.1.S1_at--397--7371Chr10:22097579..22097603 (25 bp)
GTGACACCATGCCTGTGACGATTTG
LOC_Os10g41650
Os.18619.1.S1_at--1018--2231Chr10:22097610..22097634 (25 bp)
AAATTCGCCGTCTTTTGATGATTGG
LOC_Os10g41650
Os.18619.1.S1_at--231--8071Chr10:22097634..22097658 (25 bp)
GGAGCGGCGATACTGCATCTATGTC
LOC_Os10g41650
Os.18619.1.S1_at--999--10111Chr10:22097653..22097677 (25 bp)
TATGTCTCGAGACTTTGCCATCCAA
LOC_Os10g41650
Os.18619.1.S1_at--743--451Chr10:22097819..22097843 (25 bp)
ATCTCTTCAACTTCAGCGTAATGCC
LOC_Os10g41650
Os.18619.1.S1_at--232--7071Chr10:22097836..22097860 (25 bp)
GTAATGCCATACACCGAGAGTCTTG
LOC_Os10g41650
Os.18619.1.S1_at--1047--7131Chr10:22097855..22097879 (25 bp)
GTCTTGTTAGAATCACTGCTGCTGC
LOC_Os10g41650
Os.18619.1.S1_at--749--9111Chr10:22097871..22097895 (25 bp)
TGCTGCTGCTTAAGGCATCCGGAAT
LOC_Os10g41650
Os.18619.1.S1_at--730--8191Chr10:22097891..22097915 (25 bp)
GGAATCCGGATCCTATAGGCTTGTA
LOC_Os10g41650
Target Sequence 
TGGACCCTGCCCTAGATGACAAGGTCAGGCCGGACGTGCTACACGGCGAATTGTGCGTCCTTCATGCCAACAGTGACACC
ATGCCTGTGACGATTTGGACGACAAATTCGCCGTCTTTTGATGATTGGGAGCGGCGATACTGCATCTATGTCTCGAGACT
TTGCCATCCAATGGGCCTTCTTGGTGATGGCGGGATGTTGCTGTGGGCAAAACACACCATCCACCGCTACGACCTGTGGA
GCGATGAGCTGACGGCCGTGTGCGAGCTGGGTGGCATCAGGTATCAGGGTGGTAGGCCACCAAGGTGGAAGAATCTCTTC
AACTTCAGCGTAATGCCATACACCGAGAGTCTTGTTAGAATCACTGCTGCTGCTTAAGGCATCCGGAATCCGGATCCTAT
AGGCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis