Browse Element(s) Details


Os.22822.1.S1_x_at

Description gb:NM_197792.1
DB_XREF= gi:37536943
TID=Os.22822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22822 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transcription factor (OSJNBa0057L21.30), mRNA.
PROD=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g416409/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41600NANA10+22070809..22072066hypothetical protein
LOC_Os10g41610NANA10+22073635..22077231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g41620Os.46824.2.S1_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41620Os.46824.1.S1_x_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41640Os.22822.1.S1_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640Os.22822.1.S1_x_at9/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_x_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41640OsAffx.11749.1.S1_at6/1110+22094625..22095407Transcription factor HBP-1b, putative, expressed
LOC_Os10g41650Os.18619.1.S1_at11/1110+22095989..22098088F-box domain containing protein, expressed
LOC_Os10g41660Os.46818.1.S1_at11/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41660Os.31623.1.S1_x_at1/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41670NANA10+22113302..22114156hypothetical protein
LOC_Os10g41689OsAffx.30473.1.S1_x_at11/1110+22116469..22117530Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22822.1.S1_x_at--796--9711Chr10:22095062..22095166 (25 bp)
TCAAGCTTCGGCAGCAGATGCATCG
LOC_Os10g41640
Os.22822.1.S1_x_at--454--4911Chr10:22095151..22095170 (20 bp)
GCTTCGGCAGCAGATGCATCGGATC
LOC_Os10g41640
Os.22822.1.S1_x_at--819--4971Chr10:22095161..22095185 (25 bp)
GCATCGGATCCTAACCACGAGGCAG
LOC_Os10g41640
Os.22822.1.S1_x_at--92--9451Chr10:22095164..22095188 (25 bp)
TCGGATCCTAACCACGAGGCAGGCG
LOC_Os10g41640
Os.22822.1.S1_x_at--1160--7551Chr10:22095193..22095217 (25 bp)
GGGCGCTGCTCGTCATCAACGACTA
LOC_Os10g41640
Os.22822.1.S1_x_at--463--2591Chr10:22095210..22095234 (25 bp)
AACGACTACTTCTCGTGGCTCCGAG
LOC_Os10g41640
Os.22822.1.S1_x_at--671--2051Chr10:22095217..22095241 (25 bp)
ACTTCTCGTGGCTCCGAGCGCTAAG
LOC_Os10g41640
Os.22822.1.S1_x_at--816--6131Chr10:22095263..22095287 (25 bp)
GAGGGACGCGCGTCACGGCATGGCA
LOC_Os10g41640
Os.22822.1.S1_x_at--1087--1932Chr10:22095277..22095301 (25 bp)
ACGGCATGGCAGAGCGCGCATCGCA
LOC_Os10g41640
Os.22822.1.S1_x_at--799--7391Chr10:22095465..22095489 (25 bp)
GTGATGACGTGGAATCCTGGCATGT
NONE
Os.22822.1.S1_x_at--450--3313Chr12:6967143..6967163 (21 bp)
CACATGGGTTCCACGCTGATTCAGC
NONE
Target Sequence 
TCAAGCTTCGGCAGCAGATGCATCGGATCCTAACCACGAGGCAGGCGGCGCGGGCGCTGCTCGTCATCAACGACTACTTC
TCGTGGCTCCGAGCGCTAAGCTCGCTGTGGCTGGCGCGGCCGAGGGACGCGCGTCACGGCATGGCAGAGCGCGCATCGCA
CCGACCGCGCCCCCGGCGGCACGGCCAGGTACGCGCCGCAGCCACTGCATCCCGCTGTCGGCGACCACCTCCCCACCCAC
CGGCCGGCCTGCCCAAGAGGAGAAAAGTGAGAGAGAGAGAGAAAGAGAGAGAGGAGGAAGGGAGAGGAGGGGAAAGAGAT
AGGGTGATGACGTGGAATCCTGGCATGTGGGGCCCACATGGGTTCCACGCTGATTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22822.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis