Browse Element(s) Details


Os.54414.1.S1_at

Description gb:AK105119.1
DB_XREF= gi:32990328
TID=Os.54414.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B03, full insert sequence.
FL= gb:AK105119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4180011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54414.1.S1_at--1021--2671Chr10:22168537..22168561 (25 bp)
AAGCTCGCCGACATGGGTAGGTTCC
LOC_Os10g41800
Os.54414.1.S1_at--174--5671Chr10:22168528..22168552 (25 bp)
GACATGGGTAGGTTCCGATGACGCC
LOC_Os10g41800
Os.54414.1.S1_at--227--6931Chr10:22168521..22168545 (25 bp)
GTAGGTTCCGATGACGCCATCTTCG
LOC_Os10g41800
Os.54414.1.S1_at--601--10731Chr10:22168407..22168431 (25 bp)
TTGACCAAACATTTCGGTACTCTCG
LOC_Os10g41800
Os.54414.1.S1_at--371--2511Chr10:22168400..22168424 (25 bp)
AACATTTCGGTACTCTCGAGGAGGA
LOC_Os10g41800
Os.54414.1.S1_at--205--2011Chr10:22168389..22168413 (25 bp)
ACTCTCGAGGAGGAGATGTGACGAT
LOC_Os10g41800
Os.54414.1.S1_at--1082--2951Chr10:22168361..22168385 (25 bp)
AATGGTAGTGTTTGCCGCTACGTGT
LOC_Os10g41800
Os.54414.1.S1_at--554--6851Chr10:22168352..22168376 (25 bp)
GTTTGCCGCTACGTGTTGACGAGAG
LOC_Os10g41800
Os.54414.1.S1_at--903--9631Chr10:22168302..22168326 (25 bp)
TCAGTGGAAATTTGGGTTTGTTTAT
LOC_Os10g41800
Os.54414.1.S1_at--868--10791Chr10:22168285..22168309 (25 bp)
TTGTTTATGGTTAGGCAGTAGCAGC
LOC_Os10g41800
Os.54414.1.S1_at--832--6951Chr10:22168268..22168292 (25 bp)
GTAGCAGCAATGTAGCATACTATAC
LOC_Os10g41800
Target Sequence 
AAGCTCGCCGACATGGGTAGGTTCCGATGACGCCATCTTCGCTCGCTCGCGCGCTTTTTTTTTCCCTCCTTTTCTTTTTC
ATTTTTTTTTCGGGGGCAATTTTATCTTTGATTTTTTTTTCCTACAAAATTTGACCAAACATTTCGGTACTCTCGAGGAG
GAGATGTGACGATATGAATGGTAGTGTTTGCCGCTACGTGTTGACGAGAGGCGAAGAGAAATGGAAAAAAGAAATTCAGT
GGAAATTTGGGTTTGTTTATGGTTAGGCAGTAGCAGCAATGTAGCATACTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis