Browse Element(s) Details


OsAffx.19675.1.S1_at

Description tigr:9640.m01442
TID=OsAffx.19675.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1485011/11hypothetical protein
LOC_Os09g063203/11retrotransposon, putative, centromere-specific
LOC_Os09g148703/11hypothetical protein
LOC_Os12g067201/11retrotransposon protein, putative, unclassified
LOC_Os08g111201/11retrotransposon protein, putative, unclassified
LOC_Os09g120101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14830Os.39997.2.S1_a_at11/1112+8484033..8488283hypothetical protein
LOC_Os12g14830OsAffx.19674.1.S1_at9/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.2.S1_x_at7/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.1.S1_x_at2/1112+8484033..8488283hypothetical protein
LOC_Os12g14840Os.32811.1.S1_at11/1112+8492235..8495385expressed protein
LOC_Os12g14850OsAffx.19675.1.S1_x_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.19675.1.S1_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.13714.1.S1_x_at1/1112+8504109..8504357hypothetical protein
LOC_Os12g14860OsAffx.31743.1.S1_at11/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.20705.2.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.29146.1.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein
LOC_Os12g14890Os.33878.1.S1_at3/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890OsAffx.30350.1.S1_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890Os.27102.1.S1_x_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14900NANA12+8521834..8523991retrotransposon protein, putative, unclassified
LOC_Os12g14910OsAffx.19676.1.S1_at4/1112+8528840..8529076hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19675.1.S1_at--148--3291Chr12:8504293..8504317 (25 bp)
CAAAGGCATCTTGGGTGAAAAGTAA
LOC_Os12g14850
OsAffx.19675.1.S1_at--360--4231Chr12:8504285..8504309 (25 bp)
TCTTGGGTGAAAAGTAAATGGCGAA
LOC_Os12g14850
OsAffx.19675.1.S1_at--79--9611Chr12:8504184..8504208 (25 bp)
TCAGGCCCGTTTGCCATTGGGCCAA
LOC_Os12g14850
OsAffx.19675.1.S1_at--975--4531Chr12:8504180..8504204 (25 bp)
GCCCGTTTGCCATTGGGCCAACATT
LOC_Os12g14850
OsAffx.19675.1.S1_at--990--4231Chr12:8504178..8504202 (25 bp)
CCGTTTGCCATTGGGCCAACATTCG
LOC_Os12g14850
OsAffx.19675.1.S1_at--696--10693Chr12:8569609..8569633 (25 bp)
TTGCCATTGGGCCAACATTCGCCAA
NONE
OsAffx.19675.1.S1_at--5--4454Chr05:12365262..12365283 (22 bp)
GCCATTGGGCCAACATTCGCCAATT
NONE
OsAffx.19675.1.S1_at--263--33Chr12:8569604..8569628 (25 bp)
ATTGGGCCAACATTCGCCAATTGGC
NONE
OsAffx.19675.1.S1_at--33--2517Chr09:8868018..8868038 (21 bp)
AACATTCGCCAATTGGCCCATTAGA
LOC_Os09g14870
OsAffx.19675.1.S1_at--39--106510Chr09:8868018..8868042 (25 bp)
TTCGCCAATTGGCCCATTAGAGGCC
LOC_Os09g14870
OsAffx.19675.1.S1_at--46--13110Chr09:8868036..8868060 (25 bp)
AGAGGCCCATGTATCCAAATTACAC
LOC_Os09g14870
Target Sequence 
CAAAGGCATCTTGGGTGAAAAGTAAATGGCGAAGGGTGTATGCCGAAGGAAGAAGACTTCGCCATAACAAGTCCAACTTC
AAGGAGACCCAAGGGGCCATCCCAGCCGCTCAGGCCCGTTTGCCATTGGGCCAACATTCGCCAATTGGCCCATTAGAGGC
CCATGTATCCAAATTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis