Browse Element(s) Details


OsAffx.31744.1.S1_at

Description tigr:9640.m01445
TID=OsAffx.31744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1488011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14830Os.39997.2.S1_a_at11/1112+8484033..8488283hypothetical protein
LOC_Os12g14830OsAffx.19674.1.S1_at9/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.2.S1_x_at7/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.1.S1_x_at2/1112+8484033..8488283hypothetical protein
LOC_Os12g14840Os.32811.1.S1_at11/1112+8492235..8495385expressed protein
LOC_Os12g14850OsAffx.19675.1.S1_x_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.19675.1.S1_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.13714.1.S1_x_at1/1112+8504109..8504357hypothetical protein
LOC_Os12g14860OsAffx.31743.1.S1_at11/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.20705.2.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.29146.1.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein
LOC_Os12g14890Os.33878.1.S1_at3/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890OsAffx.30350.1.S1_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890Os.27102.1.S1_x_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14900NANA12+8521834..8523991retrotransposon protein, putative, unclassified
LOC_Os12g14910OsAffx.19676.1.S1_at4/1112+8528840..8529076hypothetical protein
LOC_Os12g14920OsAffx.19677.1.S1_s_at11/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14920OsAffx.19677.2.S1_s_at9/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14920OsAffx.19677.2.S1_x_at4/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14930OsAffx.31745.2.S1_s_at11/1112+8538086..8538679Mitochondrial 22 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31744.1.S1_at--697--2771Chr12:8513122..8513146 (25 bp)
AAGAGCAAGAGCATTCCACCGCCCT
LOC_Os12g14880
OsAffx.31744.1.S1_at--858--5811Chr12:8513147..8513171 (25 bp)
GACCGATTATTATAATCTCACCGAG
LOC_Os12g14880
OsAffx.31744.1.S1_at--759--891Chr12:8513182..8513206 (25 bp)
AGGCCCTTCGCCAAGAGTTTAGCAA
LOC_Os12g14880
OsAffx.31744.1.S1_at--1054--10431Chr12:8513200..8513224 (25 bp)
TTAGCAAGGCAGAGGCAACCGCTGA
LOC_Os12g14880
OsAffx.31744.1.S1_at--448--1351Chr12:8513224..8513248 (25 bp)
AGAGAGAGGCACAACGGTTCGCGCA
LOC_Os12g14880
OsAffx.31744.1.S1_at--930--51Chr12:8513265..8513289 (25 bp)
ATTGAGTCTGCCAAGACCGCGTGCC
LOC_Os12g14880
OsAffx.31744.1.S1_at--510--5151Chr12:8513471..8513495 (25 bp)
GCAACAGAATGGGTGCGAGCACATT
LOC_Os12g14880
OsAffx.31744.1.S1_at--307--9611Chr12:8513540..8513564 (25 bp)
TCAGGACGTTTTGCCCGTACTTCGT
LOC_Os12g14880
OsAffx.31744.1.S1_at--448--3371Chr12:8513577..8513601 (25 bp)
CAGTTCCGACAAAAGGAGGCCCGAT
LOC_Os12g14880
OsAffx.31744.1.S1_at--700--2911Chr12:8513589..8513613 (25 bp)
AAGGAGGCCCGATCCACCACCAAGG
LOC_Os12g14880
OsAffx.31744.1.S1_at--569--2471Chr12:8513626..8513650 (25 bp)
AACACTTAGCAAAGGCAGAGGCGAT
LOC_Os12g14880
Target Sequence 
AAGAGCAAGAGCATTCCACCGCCCTGACCGATTATTATAATCTCACCGAGCCGAAGATGGAGGCCCTTCGCCAAGAGTTT
AGCAAGGCAGAGGCAACCGCTGAGAGAGAGGCACAACGGTTCGCGCAGGAGATGGCGAAAGCCATTGAGTCTGCCAAGAC
CGCGTGCCGTACACTTCGCCTTGCCCTTACTGACCTGGGGGCGAAGGTACGAGGAGTCCCTAGCCAAGATGCTTCTGCCT
TCGACTTCTCGGAGTGGACCCAACAGGCCAGCGGTGCGGTCTCCGATTGTGCCACTGCGTACGGCGATTGTTGTGCACGT
GTGTCGGCGGCCTTCACCATGGGCCTGCTGCAACAGAATGGGTGCGAGCACATTGCCGAGTTCCCTAAGTTTGCGAAGGG
GGATTGGGAGGTCAGCTCTCAGGACGTTTTGCCCGTACTTCGTGCCTGGCGCAAACAGTTCCGACAAAAGGAGGCCCGAT
CCACCACCAAGGCGCGCCTGCTCGAACACTTAGCAAAGGCAGAGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis