Browse Element(s) Details


OsAffx.29146.1.S1_x_at

Description tigr:9636.m01157
TID=OsAffx.29146.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1188011/11hypothetical protein
LOC_Os08g111308/11hypothetical protein
LOC_Os05g210501/11hypothetical protein
LOC_Os12g148601/11hypothetical protein
LOC_Os04g076801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11840OsAffx.29146.4.S1_s_at11/118+6936014..6936745hypothetical protein
LOC_Os08g11840OsAffx.29146.5.S1_at4/118+6936014..6936745hypothetical protein
LOC_Os08g11840OsAffx.29146.5.S1_x_at3/118+6936014..6936745hypothetical protein
LOC_Os08g11850OsAffx.22947.1.S1_x_at1/118+6942984..6947429retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11860OsAffx.31869.5.S1_x_at4/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11860OsAffx.31869.1.S1_at4/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11860OsAffx.31869.4.S1_x_at1/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11870NANA8+6954896..6956176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11880OsAffx.29146.3.S1_s_at11/118+6959038..6960790hypothetical protein
LOC_Os08g11880OsAffx.29146.1.S1_x_at11/118+6959038..6960790hypothetical protein
LOC_Os08g11880OsAffx.29146.2.S1_x_at1/118+6959038..6960790hypothetical protein
LOC_Os08g11890OsAffx.29160.1.S1_at11/118+6961399..6963349hypothetical protein
LOC_Os08g11900NANA8+6968642..6970094retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.10731.2.A1_at3/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.46314.2.S1_x_at2/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910Os.47114.1.S1_x_at2/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11910OsAffx.32036.1.S1_at1/118+6971122..6975484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11920NANA8+6978773..6984320retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29146.1.S1_x_at--736--9473Chr08:6541144..6541168 (25 bp)
TCTGACGCCGATGACGAAGACACCG
LOC_Os08g11130
OsAffx.29146.1.S1_x_at--736--2652Chr08:6541290..6541314 (25 bp)
AAGCCCTGACCATGTCGAAACCGAG
LOC_Os08g11130
OsAffx.29146.1.S1_x_at--180--2312Chr08:6541362..6541386 (25 bp)
AAAGGCGCTTGTTTCGATCGCAGCG
LOC_Os08g11130
OsAffx.29146.1.S1_x_at--965--5034Chr12:8506582..8506633 (25 bp)
GCAGCGGCCAAGGTGTCCAAGAAGA
LOC_Os12g14860
OsAffx.29146.1.S1_x_at--434--7272Chr08:6541395..6541419 (25 bp)
GTCCAAGAAGAAAGTGCTCGTCGAT
LOC_Os08g11130
OsAffx.29146.1.S1_x_at--233--4091Chr08:6959261..6959285 (25 bp)
CGACCGCTCCCGGTGTTGTGGTCGA
LOC_Os08g11880
OsAffx.29146.1.S1_x_at--9--3832Chr08:6541547..6541571 (25 bp)
CTGCCGGGACTTTAGCTTCTGCTGA
LOC_Os08g11130
OsAffx.29146.1.S1_x_at--722--10012Chr08:6541559..6541583 (25 bp)
TAGCTTCTGCTGACCGGGTTGTCAA
LOC_Os08g11130
OsAffx.29146.1.S1_x_at--80--2372Chr08:6541606..6541629 (24 bp)
AAACCATGTGCGCAAACCGGTGGCT
LOC_Os08g11130
OsAffx.29146.1.S1_x_at--911--4511Chr08:6959094..6959118 (25 bp)
GCCGCCGAAACGTCTGCTTTAGAGT
LOC_Os08g11880
OsAffx.29146.1.S1_x_at--328--10011Chr08:6959075..6959099 (25 bp)
TAGAGTATTCTCTGGCGGGACCCCA
LOC_Os08g11880
Target Sequence 
TCTGACGCCGATGACGAAGACACCGTCGAAGACAATGACGGCGAGCAGGAGGGGGAGGATAAGGGGGAGACGGAAGCTGC
AGCCGAAAAGGCTATGGACGAGGCCACCGACACCCACACCGAGATGCGCAGCTACATCGCAACTCCAAGCCCTGACCATG
TCGAAACCGAGAATCTGGAGGGGGCAAAGGCGCTTGTTTCGATCGCAGCGGCCAAGGTGTCCAAGAAGAAAGTGCTCGTC
GATGTCGCTCGTGTTTTCAGCGACGACAAGTCTTCGGACGAGACCCCTACTTCGCCTGCTGGTCGGAGCCTGGGTCTCTC
GACCGCTCCCGGTGTTGTGGTCGAGGTGGGCAGAGTGGGTGGGAGCGTTGCTGCCGGGACTTTAGCTTCTGCTGACCGGG
TTGTCAAGGCCGCGGCCAGGCTCTTCGGAAACCATGTGCGCAAACCGGTGGCTTCACCGCTCGCCAACGGGAAGGGGAAG
AAAACAGCCGCCGAAACGTCTGCTTTAGAGTATTCTCTGGCGGGACCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29146.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis