Browse Element(s) Details


Os.32811.1.S1_at

Description gb:AK119963.1
DB_XREF= gi:37989586
TID=Os.32811.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D06, full insert sequence.
FL= gb:AK119963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1484011/11expressed protein
LOC_Os08g319303/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14800NANA12+8461001..8467677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14820Os.47463.1.S1_x_at4/1112+8474441..8477468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14820Os.14491.2.S1_x_at4/1112+8474441..8477468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14830Os.39997.2.S1_a_at11/1112+8484033..8488283hypothetical protein
LOC_Os12g14830OsAffx.19674.1.S1_at9/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.2.S1_x_at7/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.1.S1_x_at2/1112+8484033..8488283hypothetical protein
LOC_Os12g14840Os.32811.1.S1_at11/1112+8492235..8495385expressed protein
LOC_Os12g14850OsAffx.19675.1.S1_x_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.19675.1.S1_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.13714.1.S1_x_at1/1112+8504109..8504357hypothetical protein
LOC_Os12g14860OsAffx.31743.1.S1_at11/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.20705.2.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.29146.1.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein
LOC_Os12g14890Os.33878.1.S1_at3/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890OsAffx.30350.1.S1_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890Os.27102.1.S1_x_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32811.1.S1_at--390--10812Chr08:19665162..19665186 (25 bp)
TTGTCCTTGCATGATTTGATTTCCT
LOC_Os08g31930
Os.32811.1.S1_at--176--6532Chr08:19665179..19665200 (22 bp)
GATTTCCTGGTAGAATCCTTTACTG
LOC_Os08g31930
Os.32811.1.S1_at--664--491Chr12:8494024..8494048 (25 bp)
ATCCTTTACTGGGACTACATTCCAC
LOC_Os12g14840
Os.32811.1.S1_at--543--112Chr08:19665237..19665260 (24 bp)
ATTCTGTTCAGTACTATGGTTTAGC
LOC_Os08g31930
Os.32811.1.S1_at--823--10451Chr12:8493967..8493991 (25 bp)
TTAGCAGACTACATTTCACCACGAC
LOC_Os12g14840
Os.32811.1.S1_at--849--1791Chr12:8493944..8493968 (25 bp)
ACCGCACTAGTTGCTGTTCAGTCAG
LOC_Os12g14840
Os.32811.1.S1_at--673--7111Chr12:8493924..8493948 (25 bp)
GTCAGTTCAGACAACAACCATGCAA
LOC_Os12g14840
Os.32811.1.S1_at--917--5191Chr12:8493903..8493927 (25 bp)
GCAATTGTTTGGCATACCTGTCTAT
LOC_Os12g14840
Os.32811.1.S1_at--667--3571Chr12:8493891..8493915 (25 bp)
CATACCTGTCTATTGGCATTGCTGA
LOC_Os12g14840
Os.32811.1.S1_at--942--4931Chr12:8493876..8493900 (25 bp)
GCATTGCTGAATGCCAATCATGGCC
LOC_Os12g14840
Os.32811.1.S1_at--1105--4371Chr12:8493864..8493888 (25 bp)
GCCAATCATGGCCTTATTACCAAGT
LOC_Os12g14840
Target Sequence 
TTGTCCTTGCATGATTTGATTTCCTGGTAGAATCCTTTACTGGGACTACATTCCACAAGTTAAGTTATATTCTGTTCAGT
ACTATGGTTTAGCAGACTACATTTCACCACGACCGCACTAGTTGCTGTTCAGTCAGTTCAGACAACAACCATGCAATTGT
TTGGCATACCTGTCTATTGGCATTGCTGAATGCCAATCATGGCCTTATTACCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis