Browse Element(s) Details


Os.39997.1.S1_x_at

Description gb:CF327839
DB_XREF= gi:33803927
DB_XREF=NACL--02-H20.b1
CLONE=NACL--02-H20
TID=Os.39997.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39997 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g148302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14800NANA12+8461001..8467677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14820Os.47463.1.S1_x_at4/1112+8474441..8477468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14820Os.14491.2.S1_x_at4/1112+8474441..8477468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14830Os.39997.2.S1_a_at11/1112+8484033..8488283hypothetical protein
LOC_Os12g14830OsAffx.19674.1.S1_at9/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.2.S1_x_at7/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.1.S1_x_at2/1112+8484033..8488283hypothetical protein
LOC_Os12g14840Os.32811.1.S1_at11/1112+8492235..8495385expressed protein
LOC_Os12g14850OsAffx.19675.1.S1_x_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.19675.1.S1_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.13714.1.S1_x_at1/1112+8504109..8504357hypothetical protein
LOC_Os12g14860OsAffx.31743.1.S1_at11/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.20705.2.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.29146.1.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39997.1.S1_x_at--366--2073Chr12:8487103..8487127 (25 bp)
ACTTGAGATCCATCCCTGCATGTCA
LOC_Os12g14830
Os.39997.1.S1_x_at--797--9051Chr09:1758175..1758199 (25 bp)
TGCATGTCACACCACAACAATCTCA
NONE
Os.39997.1.S1_x_at--72--3073Chr12:8487137..8487161 (25 bp)
AATCTCAAGTATCCAAGCCTCCCAT
LOC_Os12g14830
Os.39997.1.S1_x_at--307--1432Chr09:1758265..1758289 (25 bp)
AGAAAATAGGTGGAGCTTGCTGCTG
NONE
Os.39997.1.S1_x_at--98--10372Chr09:1758313..1758411 (25 bp)
TTTTTCCTCCACTTGGTCATTGATG
NONE
Os.39997.1.S1_x_at--372--9252Chr09:1758317..1758415 (25 bp)
TCCTCCACTTGGTCATTGATGCAAG
NONE
Os.39997.1.S1_x_at--484--1491Chr09:1758423..1758447 (25 bp)
AGCAAAGAACAGCTGCAACTCGTCT
NONE
Os.39997.1.S1_x_at--635--2751Chr09:1758427..1758451 (25 bp)
AAGAACAGCTGCAACTCGTCTCTCT
NONE
Os.39997.1.S1_x_at--627--3691NONE
CTATCTCCCTCGGTTTACTCAGATT
NONE
Os.39997.1.S1_x_at--814--9291NONE
TCCCTCGGTTTACTCAGATTCGGAG
NONE
Os.39997.1.S1_x_at--1079--7851NONE
GGTTTACTCAGATTCGGAGAATTCG
NONE
Target Sequence 
ACTTGAGATCCATCCCTGCATGTCACACCACAACAATCTCAAGTATCCAAGCCTCCCATCCATCCAAATATCTTGCACAT
GCATGGATTCGTGAGGGAGATCGGGAAGAAAATAGGTGGAGCTTGCTGCTGGTTGCAGCAGCAAAACAACCATGTTTTTC
CTCCACTTGGTCATTGATGCAAGATTTTAGAGCAAAGAACAGCTGCAACTCGTCTCTCTCCACTCCGACGATTACAACCC
CTATCTCCCTCGGTTTACTCAGATTCGGAGAATTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39997.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis