Browse Element(s) Details


OsAffx.19677.1.S1_s_at

Description tigr:9640.m01449
TID=OsAffx.19677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1492011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein
LOC_Os12g14890Os.33878.1.S1_at3/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890OsAffx.30350.1.S1_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14890Os.27102.1.S1_x_at1/1112+8515093..8517516retrotransposon protein, putative, unclassified
LOC_Os12g14900NANA12+8521834..8523991retrotransposon protein, putative, unclassified
LOC_Os12g14910OsAffx.19676.1.S1_at4/1112+8528840..8529076hypothetical protein
LOC_Os12g14920OsAffx.19677.1.S1_s_at11/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14920OsAffx.19677.2.S1_s_at9/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14920OsAffx.19677.2.S1_x_at4/1112+8533736..8536001retrotransposon protein, putative, unclassified
LOC_Os12g14930OsAffx.31745.2.S1_s_at11/1112+8538086..8538679Mitochondrial 22 kDa protein, putative, expressed
LOC_Os12g14939OsAffx.32108.1.S1_x_at1/1112+8541746..8541999hypothetical protein
LOC_Os12g14948NANA12+8545147..8545393NA
LOC_Os12g14960OsAffx.18193.1.S1_at1/1112+8559512..8560324Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19677.1.S1_s_at--73--7452Chr12:20634964..20634988 (25 bp)
GTGTAAACCACGTACGAGCGAGCGC
NONE
OsAffx.19677.1.S1_s_at--83--751Chr12:8535520..8535544 (25 bp)
ATGTTTTGCAGCGAGTCAAGCGTAA
LOC_Os12g14920
OsAffx.19677.1.S1_s_at--801--5752Chr12:20635046..20635070 (25 bp)
GACGGTGCACACTCTTCACCGATAG
NONE
OsAffx.19677.1.S1_s_at--1096--2312Chr12:20635076..20635100 (25 bp)
AAAGTGCCCTATGTCTCGCGAAGAA
NONE
OsAffx.19677.1.S1_s_at--475--8612Chr12:20635087..20635111 (25 bp)
TGTCTCGCGAAGAACCCGGGTGGAA
NONE
OsAffx.19677.1.S1_s_at--211--10532Chr12:20635120..20635144 (25 bp)
TTCAGCTGAGTTGAGTGCCGCATGC
NONE
OsAffx.19677.1.S1_s_at--420--6113Chr12:20635132..20635156 (25 bp)
GAGTGCCGCATGCTTTCAGGTAAGC
NONE
OsAffx.19677.1.S1_s_at--443--6192Chr12:20635203..20635227 (25 bp)
GAGGACTTGCATCTATTTCAACTAG
NONE
OsAffx.19677.1.S1_s_at--1093--6152Chr12:20635266..20635290 (25 bp)
GAGGAGATCTACATGGTGCAACCCG
NONE
OsAffx.19677.1.S1_s_at--588--6733Chr12:20635384..20635408 (25 bp)
GTTCATGGTCGATCGATACCTTTCC
NONE
OsAffx.19677.1.S1_s_at--458--6473Chr12:20635398..20635422 (25 bp)
GATACCTTTCCATCCCTGTTGTGGG
NONE
Target Sequence 
GTGTAAACCACGTACGAGCGAGCGCAGAAAGCGAAATGTTTTGCAGCGAGTCAAGCGTAATATGATCAAAAGGAAATGGG
GAAGGACCAAGGACGGTGCACACTCTTCACCGATAGCCGCAAAAGTGCCCTATGTCTCGCGAAGAACCCGGGTGGAAGTG
AATTCTTCAGCTGAGTTGAGTGCCGCATGCTTTCAGGTAAGCAGTCAAGCTCAAAACCATCTGGACGATTCTCGGTATAG
TAGCGGGCGAGGACTTGCATCTATTTCAACTAGACGTGAATACAGTCTTTCTCCATGGCAACAACGAGGAGGAGGAGATC
TACATGGTGCAACCCGAGGGGTTCGAAACTCGGGGAAAAGAAGGTCACATATGGTTGTTGAAGAAGAGCTTGTATGGGCT
CCGAGGCAGTGGTCAAAGAAATTCGACAAGTTCATGGTCGATCGATACCTTTCCATCCCTGTTGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19677.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis