Browse Element(s) Details


OsAffx.18193.1.S1_at

Description tigr:9638.m00837
TID=OsAffx.18193.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative Athila retroelement ORF1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0964011/11hypothetical protein
LOC_Os11g276702/11hypothetical protein
LOC_Os04g071201/11Transposable element protein, putative, Retrotrans_gag
LOC_Os03g333801/11hypothetical protein
LOC_Os12g149601/11Transposable element protein, putative, Retrotrans_gag
LOC_Os11g230401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09610OsAffx.32001.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.20687.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09620OsAffx.18192.1.S1_at11/1110+4965016..4970719Protein kinase domain containing protein, expressed
LOC_Os10g09630OsAffx.30358.1.S1_at11/1110+4979240..4980064hypothetical protein
LOC_Os10g09640OsAffx.18193.1.S1_at11/1110+4981313..4982152hypothetical protein
LOC_Os10g09640OsAffx.26961.1.S1_x_at1/1110+4981313..4982152hypothetical protein
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09660OsAffx.18194.1.S1_at11/1110+4995519..4996697hypothetical protein
LOC_Os10g09670OsAffx.20684.1.S1_at11/1110+4997582..4998907hypothetical protein
LOC_Os10g09680OsAffx.8432.1.S1_at11/1110+5000281..5001416hypothetical protein
LOC_Os10g09690OsAffx.20683.1.S1_at11/1110+5003652..5004776wall-associated kinase 4, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18193.1.S1_at--943--8231Chr10:4981526..4981550 (25 bp)
GGCATGAAGCAAGAGGTTGTTCAGT
LOC_Os10g09640
OsAffx.18193.1.S1_at--113--1491Chr10:4981533..4981557 (25 bp)
AGCAAGAGGTTGTTCAGTGGAGATT
LOC_Os10g09640
OsAffx.18193.1.S1_at--915--6731Chr10:4981544..4981568 (25 bp)
GTTCAGTGGAGATTGTTTCCGTTCT
LOC_Os10g09640
OsAffx.18193.1.S1_at--822--1091Chr10:4981548..4981572 (25 bp)
AGTGGAGATTGTTTCCGTTCTCTCT
LOC_Os10g09640
OsAffx.18193.1.S1_at--11--6618Chr10:4981554..4981578 (25 bp)
GATTGTTTCCGTTCTCTCTTCATGA
LOC_Os10g09640
OsAffx.18193.1.S1_at--626--5531Chr10:4981697..4981844 (25 bp)
GAAATTCTAAGTTTCCGGGAGTCTG
LOC_Os10g09640
OsAffx.18193.1.S1_at--1158--3711Chr10:4981703..4981850 (25 bp)
CTAAGTTTCCGGGAGTCTGCATTCT
LOC_Os10g09640
OsAffx.18193.1.S1_at--592--10291Chr10:4982003..4982027 (25 bp)
TTTGCCAAGCCTGAAACCGAGCCTT
LOC_Os10g09640
OsAffx.18193.1.S1_at--402--3851Chr10:4982013..4982037 (25 bp)
CTGAAACCGAGCCTTCAACATGTTC
LOC_Os10g09640
OsAffx.18193.1.S1_at--154--9733Chr10:4982089..4982113 (25 bp)
TCAAGCTCCGGGTTGTGCTCCCATA
LOC_Os10g09640
OsAffx.18193.1.S1_at--662--7671Chr10:4982098..4982122 (25 bp)
GGGTTGTGCTCCCATATTCAGGGAT
LOC_Os10g09640
Target Sequence 
GGCATGAAGCAAGAGGTTGTTCAGTGGAGATTGTTTCCGTTCTCTCTTCATGAGAGAGCGAAACAATGGTACACATCTAC
CGTCGAGTGTGTAAACGGTAACTGGGAGAAATTGCGAGACAGGTTCTGCCTCGCATTCTTCGCTGTAACCCGTATTACTA
CTCTTCGTGTAGAAATTCTAAGTTTCCGGGAGTCTGCATTCTACCTTGACATAACTGCTGGAGGGTCATTCATGCACAAA
ACTCCCGCCGAAGGCAAGGAAATTCTCGATCGCATATCGGAAAATACCTCCTTTGTCGGGCAGTGTGTTGAACCCCATCC
AGAGGCATTTGTGTCAGGAAGTGAGGAACCTTCTTTTGCCAAGCCTGAAACCGAGCCTTCAACATGTTCGGGTCTGACTA
AAGAGTCCTCCCTGAAGCCATCGCCGGATTCCAAAGACATTCAAGCTCCGGGTTGTGCTCCCATATTCAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis