Browse Element(s) Details


OsAffx.30358.1.S1_at

Description tigr:9638.m00836
TID=OsAffx.30358.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0963011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09610OsAffx.32001.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.20687.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09620OsAffx.18192.1.S1_at11/1110+4965016..4970719Protein kinase domain containing protein, expressed
LOC_Os10g09630OsAffx.30358.1.S1_at11/1110+4979240..4980064hypothetical protein
LOC_Os10g09640OsAffx.18193.1.S1_at11/1110+4981313..4982152hypothetical protein
LOC_Os10g09640OsAffx.26961.1.S1_x_at1/1110+4981313..4982152hypothetical protein
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09660OsAffx.18194.1.S1_at11/1110+4995519..4996697hypothetical protein
LOC_Os10g09670OsAffx.20684.1.S1_at11/1110+4997582..4998907hypothetical protein
LOC_Os10g09680OsAffx.8432.1.S1_at11/1110+5000281..5001416hypothetical protein
LOC_Os10g09690OsAffx.20683.1.S1_at11/1110+5003652..5004776wall-associated kinase 4, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30358.1.S1_at--574--1017Chr10:4979354..4979378 (25 bp)
AGGTTCGGCCAAACCCTGGCTGCGT
LOC_Os10g09630
OsAffx.30358.1.S1_at--626--3911Chr10:4979369..4979393 (25 bp)
CTGGCTGCGTCTGCTCAGGTTGGCT
LOC_Os10g09630
OsAffx.30358.1.S1_at--450--7171Chr10:4979377..4979401 (25 bp)
GTCTGCTCAGGTTGGCTCTGCACGT
LOC_Os10g09630
OsAffx.30358.1.S1_at--501--8531Chr10:4979401..4979425 (25 bp)
TGGACGATCGGGATGGCTTGCTGAT
LOC_Os10g09630
OsAffx.30358.1.S1_at--829--3851Chr10:4979421..4979445 (25 bp)
CTGATGGCGGTTGCAAGGGCAAAAT
LOC_Os10g09630
OsAffx.30358.1.S1_at--515--8231Chr10:4979438..4979462 (25 bp)
GGCAAAATGGACAATTCGCATGGCT
LOC_Os10g09630
OsAffx.30358.1.S1_at--28--851Chr10:4979444..4979468 (25 bp)
ATGGACAATTCGCATGGCTACAACC
LOC_Os10g09630
OsAffx.30358.1.S1_at--1123--4992Chr10:4979455..4979479 (25 bp)
GCATGGCTACAACCATCATACCGAC
LOC_Os10g09630
OsAffx.30358.1.S1_at--762--25914Chr12:4787924..4787943 (20 bp)
AACCATCATACCGACCCTATAAAAG
NONE
OsAffx.30358.1.S1_at--992--29115Chr12:13469456..13469481 (25 bp)
AAGGAGGAGCTCACTTCATTCTCAA
NONE
OsAffx.30358.1.S1_at--437--3751Chr10:4979496..4979520 (25 bp)
CTCACTTCATTCTCAACATACTCAA
LOC_Os10g09630
Target Sequence 
AGGTTCGGCCAAACCCTGGCTGCGTCTGCTCAGGTTGGCTCTGCACGTGGACGATCGGGATGGCTTGCTGATGGCGGTTG
CAAGGGCAAAATGGACAATTCGCATGGCTACAACCATCATACCGACCCTATAAAAGGAGGAGCTCACTTCATTCTCAACA
TACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis