Browse Element(s) Details


OsAffx.30359.1.S1_at

Description tigr:9638.m00838
TID=OsAffx.30359.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0965011/11Zinc knuckle family protein
LOC_Os04g194301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09610OsAffx.32001.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09610OsAffx.20687.1.S1_at11/1110+4956155..4962327retrotransposon protein, putative, unclassified
LOC_Os10g09620OsAffx.18192.1.S1_at11/1110+4965016..4970719Protein kinase domain containing protein, expressed
LOC_Os10g09630OsAffx.30358.1.S1_at11/1110+4979240..4980064hypothetical protein
LOC_Os10g09640OsAffx.18193.1.S1_at11/1110+4981313..4982152hypothetical protein
LOC_Os10g09640OsAffx.26961.1.S1_x_at1/1110+4981313..4982152hypothetical protein
LOC_Os10g09650OsAffx.30359.1.S1_at11/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09650OsAffx.11284.2.S1_at1/1110+4987138..4987890Zinc knuckle family protein
LOC_Os10g09660OsAffx.18194.1.S1_at11/1110+4995519..4996697hypothetical protein
LOC_Os10g09670OsAffx.20684.1.S1_at11/1110+4997582..4998907hypothetical protein
LOC_Os10g09680OsAffx.8432.1.S1_at11/1110+5000281..5001416hypothetical protein
LOC_Os10g09690OsAffx.20683.1.S1_at11/1110+5003652..5004776wall-associated kinase 4, putative
LOC_Os10g09700OsAffx.20682.1.S1_at11/1110+5008228..5011320Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30359.1.S1_at--298--2891Chr10:4987231..4987483 (25 bp)
AAGGGTGAATACGTGGCCGCTGTCC
LOC_Os10g09650
OsAffx.30359.1.S1_at--115--1071Chr10:4987544..4987568 (25 bp)
AGGGATCACCTCGATGCTATGCTGG
LOC_Os10g09650
OsAffx.30359.1.S1_at--16--10151Chr10:4987561..4987585 (25 bp)
TATGCTGGTGGTGCATTCTTCTCAA
LOC_Os10g09650
OsAffx.30359.1.S1_at--554--111Chr10:4987575..4987599 (25 bp)
ATTCTTCTCAAAGACGGTCCGAGCG
LOC_Os10g09650
OsAffx.30359.1.S1_at--973--2791Chr10:4987618..4987642 (25 bp)
AAGATGGTACCGACTATGGGCTGGA
LOC_Os10g09650
OsAffx.30359.1.S1_at--209--5751Chr10:4987692..4987716 (25 bp)
GACGGAAATGCTGACCACAAAGTTG
LOC_Os10g09650
OsAffx.30359.1.S1_at--445--1251Chr10:4987712..4987736 (25 bp)
AGTTGGACCTCCTAGTGAAGAAGCT
LOC_Os10g09650
OsAffx.30359.1.S1_at--451--8332Chr10:4987764..4987788 (25 bp)
GGCTGCCGTCAAAGCATTGGATTCA
LOC_Os10g09650
OsAffx.30359.1.S1_at--798--10511Chr10:4987785..4987809 (25 bp)
TTCACATATCACTTGCGAGGTCTGC
LOC_Os10g09650
OsAffx.30359.1.S1_at--587--1031Chr10:4987802..4987826 (25 bp)
AGGTCTGCGGAAACACCGGACACAT
LOC_Os10g09650
OsAffx.30359.1.S1_at--538--671Chr10:4987832..4987856 (25 bp)
ATGACTACCCCGAGACTCGTGAAGA
LOC_Os10g09650
Target Sequence 
AAGGGTGAATACGTGGCCGCTGTCCTCATCATGGGATGGACGACTGGCTCATCCTACAGAGTTTCTACAATGGACTCCCT
CATCCAGGGATCACCTCGATGCTATGCTGGTGGTGCATTCTTCTCAAAGACGGTCCGAGCGGCCATTGATCTTTTTGAGA
AGATGGTACCGACTATGGGCTGGAGCGAAGAACGACTCCAGACCCGTCAACGTGGCATGCATACCGTCAAGGAGACGGAA
ATGCTGACCACAAAGTTGGACCTCCTAGTGAAGAAGCTAGACAATCAGGAGAAAGGCAAACCACAGGCTGCCGTCAAAGC
ATTGGATTCACATATCACTTGCGAGGTCTGCGGAAACACCGGACACATGGGGAATGACTACCCCGAGACTCGTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis